Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b02f
(594 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055) 33 0.23
SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9) 33 0.23
SB_703| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_14757| Best HMM Match : DUF468 (HMM E-Value=6.5) 31 0.93
SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_40803| Best HMM Match : SRCR (HMM E-Value=0.00013) 29 3.7
SB_58065| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 28 6.5
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 27 8.6
SB_19207| Best HMM Match : ig (HMM E-Value=1.2e-11) 27 8.6
>SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 57.6 bits (133), Expect = 7e-09
Identities = 32/106 (30%), Positives = 54/106 (50%)
Frame = +1
Query: 250 EIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDDT 429
EI+ +A +TIG SG C I G + +PF+ ++ +L YGY+ D T
Sbjct: 4 EILSWLAIVLTIGFFASGILACKRIIVSGDVGDVQFLPFVTTLMNCLLWTIYGYLKDDST 63
Query: 430 MIQVNMFGLALNIVYVLIYFNYTQQKVKVWAQIGLAGAVSAALIGY 567
+I VN G L +VY+L + +++++ A + + SA+L Y
Sbjct: 64 IIIVNFVGALLQVVYILCFLYFSRERGNNLAFLFYSAIASASLFMY 109
>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 321 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLHTP*RHHDSSQHVRSGLKYRLRADILQLH 497
H+ A +H+ R+C Y HP + +H P RH ++ ++ KY Q+H
Sbjct: 276 HVHAPRHANAHTRNQTRKCTYTHPDTQMHVHAP-RHSNARTRTQT-RKYTYTHQDTQMH 332
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 321 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLHTP*RH 428
H+ A +H+ R R Y HP I +HTP RH
Sbjct: 194 HVHAPRHANARTRTQTREYTYTHPDTRIHVHTP-RH 228
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 321 HIQAGQHSRDRHHAVPRRCCYDHPQLAI 404
H+ A +H+ R R+C Y HP + I
Sbjct: 140 HVHAPRHANARTRTQTRKCTYTHPDIQI 167
>SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)
Length = 685
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 321 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLHTP*RHHDSSQHVRSGLKYRLRADI-LQLH 497
H+ A +++ H R+C Y HP + + +H P RH ++ ++ D + LH
Sbjct: 293 HVHAHKYANAHTHTQTRKCTYTHPGMQMHVHAP-RHANTCTRTQARKCTYTHPDTQMHLH 351
Query: 498 PAEGQ 512
A Q
Sbjct: 352 AARTQ 356
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 321 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLHTP 419
H+QA H+ R R+C Y P + +H P
Sbjct: 237 HVQAPTHANTRTRTKARKCTYTQPGTQMHVHAP 269
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 369 RRCCYDHPQLAIWLHTP*RHHDSSQHVRSGLKYRLRADILQLHP 500
R+C Y HP + +H P RH ++ + ++ + D +HP
Sbjct: 601 RKCTYTHPDIQKHVHAP-RHANARRRTKTRKCTYTQIDTQMMHP 643
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 321 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLH 413
H+ A H+ R R+C Y HP + +H
Sbjct: 265 HVHAPGHANARTRTQARKCTYTHPGTQMHVH 295
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +3
Query: 369 RRCCYDHPQLAIWLHTP*RHHDSSQHVRSGLKYRLRADILQLHPAEGQGLGSDRSGRCCV 548
RRC Y HP I +H P RH ++ ++ LK Q+H G+ R+
Sbjct: 358 RRCTYTHPVTQINVHAP-RHVNARTRTQT-LKCTYTHPDTQIH-VHAPRYGNARTRTQAH 414
Query: 549 SCSYRIRPD 575
C+Y PD
Sbjct: 415 KCTY-THPD 422
>SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)
Length = 231
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 321 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLHTP*RHHDSSQHVRSGLKYRLRADI-LQLH 497
H+ A +++ H R+C Y HP + + +H P RH ++ ++ D + LH
Sbjct: 68 HVHAHKYANAHTHTQTRKCTYTHPGMQMHVHAP-RHANTCTRTQARKCTYTHPDTQMHLH 126
Query: 498 PAEGQ 512
A Q
Sbjct: 127 AARTQ 131
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 321 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLHTP 419
H+QA H+ R R+C Y P + +H P
Sbjct: 12 HVQAPTHANTRTRTKARKCTYTQPGTQMHVHAP 44
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 321 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLH 413
H+ A H+ R R+C Y HP + +H
Sbjct: 40 HVHAPGHANARTRTQARKCTYTHPGTQMHVH 70
>SB_703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 31.1 bits (67), Expect = 0.70
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +1
Query: 313 CWDIYKQGSTRGIGIMPFLGGVVMTILNLQ---YGYILRDDTMIQVNMFGLALNIVYVLI 483
CW K + I +G V++ + NL G+I R+ T+ N+ G +NIV+ +
Sbjct: 71 CWIFQKLYLPASV-IGGIVGLVILQLANLDPQVSGFIKRNFTLGWYNLAGFLINIVFSSL 129
Query: 484 YFNYTQQKVKV-WAQIG 531
+ VKV W Q G
Sbjct: 130 FLGTKIPNVKVIWNQAG 146
>SB_14757| Best HMM Match : DUF468 (HMM E-Value=6.5)
Length = 198
Score = 30.7 bits (66), Expect = 0.93
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 321 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLHTP 419
H+ A +H+ R+C Y HP I +H P
Sbjct: 113 HVHAPRHANTCTRTQTRKCTYTHPDTQIHVHAP 145
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +3
Query: 321 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLHTP*RHHDSSQHVRSGLKYRLR 476
H+ A ++ R +C Y HP + +H P RH ++ + ++ R +
Sbjct: 141 HVHAPRYGNARTRTQAHKCTYTHPDTQMHVHAP-RHANAQTPRHANVRTRTK 191
>SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 393 EDGHNNTSEERHDADPASAALLVYVPAYETAGEHLPNGYE 274
E G N SE+R DAD + + +Y + AGE + GY+
Sbjct: 1139 EQGRRNISEDR-DADDQAGSQSLYPDVKQNAGEKVQPGYQ 1177
>SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = -1
Query: 543 STGQTDLSPNLDLLLGVIEVYQHVDDI*GQTEHVDLNHGVVTEYVTILQVEDGHNNTSEE 364
S GQ L+P L + L V + + Q +H DL +G E ++L + ++ ++
Sbjct: 846 SRGQLSLAPTLRVQLRHSRVTAGLPGLAQQVQHADLVNG-REELQSVLVRGNRKHSKNKH 904
Query: 363 RHDADPASAALLVY-VPAYETAGEHL 289
H A+ S A++ Y + + +G+HL
Sbjct: 905 NHIANSGSTAVIRYRMLSPALSGKHL 930
>SB_40803| Best HMM Match : SRCR (HMM E-Value=0.00013)
Length = 269
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 369 RRCCYDHPQLAIWLHTP*RHHDSSQHVRSGLKYRLRADILQLHP 500
R+C Y HP + +H P RH ++ + ++ + D +HP
Sbjct: 68 RKCTYTHPDIQKHVHAP-RHANARRRTKTRKCTYTQIDTQMMHP 110
>SB_58065| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 247 KEIVGSIAAFV--TIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGY 411
KEI G + + I + + S W+ Y G+ RG G PF G + +L + Y
Sbjct: 544 KEIYGELRRNLIGNIYRQYVTSGFVWEQYDDGTGRGKGTHPFTGWSSLVVLMMAEQY 600
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 319 DIYKQGSTRGIGIMPFLG--GVVMTILNLQYGYILRDDTMIQVNMFGLALNIVYVLI 483
+ Y+ G G+ I GVV+T+L+ G ++RDD + + + + +V ++
Sbjct: 295 ETYRGGDDMGVVIRVLSDDMGVVITVLSDDMGVVIRDDMGVVITVLSDDMGVVITVL 351
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 345 RDRHHAVPRRCCYD 386
RDRHH + RC YD
Sbjct: 127 RDRHHRIDARCVYD 140
>SB_19207| Best HMM Match : ig (HMM E-Value=1.2e-11)
Length = 418
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 213 DGRLSGYSSTVQRDSGLDSGLRNHWADVLRQFHMLGHIQAGQHSRDRHHAVPRRCC 380
+G+LSG ST++R + S R +W +R + +R R H + ++ C
Sbjct: 282 EGKLSGIISTLRRAKHVSSKCRKYW---IRAICFEAFLACDVKTRTRKHRLCKKDC 334
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,237,967
Number of Sequences: 59808
Number of extensions: 364027
Number of successful extensions: 914
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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