Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b02f
(594 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC009621-1|AAH09621.1| 167|Homo sapiens RAG1AP1 protein protein. 44 3e-04
AL691442-7|CAI15322.1| 167|Homo sapiens recombination activatin... 44 3e-04
CR457148-1|CAG33429.1| 221|Homo sapiens LOC55974 protein. 44 5e-04
BC005943-1|AAH05943.1| 221|Homo sapiens recombination activatin... 44 5e-04
AL691442-8|CAI15323.1| 221|Homo sapiens recombination activatin... 44 5e-04
AF126023-1|AAF17232.1| 221|Homo sapiens stromal cell protein pr... 44 5e-04
BC036522-1|AAH36522.1| 780|Homo sapiens cation channel, sperm a... 35 0.19
BC032950-1|AAH32950.1| 780|Homo sapiens cation channel, sperm a... 35 0.19
AF407333-1|AAL14105.1| 780|Homo sapiens sperm ion channel protein. 35 0.19
AY286318-1|AAQ23050.1| 231|Homo sapiens spermatid-specific link... 30 7.1
AK131302-1|BAD18470.1| 626|Homo sapiens protein ( Homo sapiens ... 29 9.4
>BC009621-1|AAH09621.1| 167|Homo sapiens RAG1AP1 protein protein.
Length = 167
Score = 44.4 bits (100), Expect = 3e-04
Identities = 28/88 (31%), Positives = 41/88 (46%)
Frame = +1
Query: 253 IVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDDTM 432
I G+ F T+G +G + S + +PFL V + L YG + D +
Sbjct: 11 IYGACVVF-TLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGIL 69
Query: 433 IQVNMFGLALNIVYVLIYFNYTQQKVKV 516
I VN G AL +Y+L Y +Y +K KV
Sbjct: 70 IVVNTVGAALQTLYILAYLHYCPRKAKV 97
>AL691442-7|CAI15322.1| 167|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 167
Score = 44.4 bits (100), Expect = 3e-04
Identities = 28/88 (31%), Positives = 41/88 (46%)
Frame = +1
Query: 253 IVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDDTM 432
I G+ F T+G +G + S + +PFL V + L YG + D +
Sbjct: 11 IYGACVVF-TLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGIL 69
Query: 433 IQVNMFGLALNIVYVLIYFNYTQQKVKV 516
I VN G AL +Y+L Y +Y +K KV
Sbjct: 70 IVVNTVGAALQTLYILAYLHYCPRKAKV 97
>CR457148-1|CAG33429.1| 221|Homo sapiens LOC55974 protein.
Length = 221
Score = 43.6 bits (98), Expect = 5e-04
Identities = 32/105 (30%), Positives = 47/105 (44%)
Frame = +1
Query: 253 IVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDDTM 432
I G+ F T+G +G + S + +PFL V + L YG + D +
Sbjct: 11 IYGACVVF-TLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGIL 69
Query: 433 IQVNMFGLALNIVYVLIYFNYTQQKVKVWAQIGLAGAVSAALIGY 567
I VN G AL +Y+L Y +Y +K V Q A + L+GY
Sbjct: 70 IVVNTVGAALQTLYILAYLHYCPRKRVVLLQ--TATLLGVLLLGY 112
>BC005943-1|AAH05943.1| 221|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 221
Score = 43.6 bits (98), Expect = 5e-04
Identities = 32/105 (30%), Positives = 47/105 (44%)
Frame = +1
Query: 253 IVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDDTM 432
I G+ F T+G +G + S + +PFL V + L YG + D +
Sbjct: 11 IYGACVVF-TLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGIL 69
Query: 433 IQVNMFGLALNIVYVLIYFNYTQQKVKVWAQIGLAGAVSAALIGY 567
I VN G AL +Y+L Y +Y +K V Q A + L+GY
Sbjct: 70 IVVNTVGAALQTLYILAYLHYCPRKRVVLLQ--TATLLGVLLLGY 112
>AL691442-8|CAI15323.1| 221|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 221
Score = 43.6 bits (98), Expect = 5e-04
Identities = 32/105 (30%), Positives = 47/105 (44%)
Frame = +1
Query: 253 IVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDDTM 432
I G+ F T+G +G + S + +PFL V + L YG + D +
Sbjct: 11 IYGACVVF-TLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGIL 69
Query: 433 IQVNMFGLALNIVYVLIYFNYTQQKVKVWAQIGLAGAVSAALIGY 567
I VN G AL +Y+L Y +Y +K V Q A + L+GY
Sbjct: 70 IVVNTVGAALQTLYILAYLHYCPRKRVVLLQ--TATLLGVLLLGY 112
>AF126023-1|AAF17232.1| 221|Homo sapiens stromal cell protein
protein.
Length = 221
Score = 43.6 bits (98), Expect = 5e-04
Identities = 32/105 (30%), Positives = 47/105 (44%)
Frame = +1
Query: 253 IVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDDTM 432
I G+ F T+G +G + S + +PFL V + L YG + D +
Sbjct: 11 IYGACVVF-TLGMFSAGLSDLRHMRMTRSVDNVRFLPFLTTEVNNLGWLSYGALKGDGIL 69
Query: 433 IQVNMFGLALNIVYVLIYFNYTQQKVKVWAQIGLAGAVSAALIGY 567
I VN G AL +Y+L Y +Y +K V Q A + L+GY
Sbjct: 70 IVVNTVGAALQTLYILAYLHYCPRKRVVLLQ--TATLLGVLLLGY 112
>BC036522-1|AAH36522.1| 780|Homo sapiens cation channel, sperm
associated 1 protein.
Length = 780
Score = 35.1 bits (77), Expect = 0.19
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 321 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLHTP*RHHDSSQHVRS 455
H+ QH +HH VP R H Q + H RHH++ QH +S
Sbjct: 198 HLSGLQHDESQHHQVPHRGWPHHHQ--VHHHGRSRHHEAHQHGKS 240
>BC032950-1|AAH32950.1| 780|Homo sapiens cation channel, sperm
associated 1 protein.
Length = 780
Score = 35.1 bits (77), Expect = 0.19
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 321 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLHTP*RHHDSSQHVRS 455
H+ QH +HH VP R H Q + H RHH++ QH +S
Sbjct: 198 HLSGLQHDESQHHQVPHRGWPHHHQ--VHHHGRSRHHEAHQHGKS 240
>AF407333-1|AAL14105.1| 780|Homo sapiens sperm ion channel protein.
Length = 780
Score = 35.1 bits (77), Expect = 0.19
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 321 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLHTP*RHHDSSQHVRS 455
H+ QH +HH VP R H Q + H RHH++ QH +S
Sbjct: 198 HLSGLQHDESQHHQVPHRGWPHHHQ--VHHHGRSRHHEAHQHGKS 240
>AY286318-1|AAQ23050.1| 231|Homo sapiens spermatid-specific linker
histone H1-like protein protein.
Length = 231
Score = 29.9 bits (64), Expect = 7.1
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 414 YVTILQVEDGHNNTSEERHDADPA-SAALLVYVPAYETAGEHLPN 283
+VT+L GH ERH A + SA L Y + AG+ +P+
Sbjct: 55 WVTVLDPLSGHTGREAERHFATVSISAVELKYCHGWRPAGQRVPS 99
>AK131302-1|BAD18470.1| 626|Homo sapiens protein ( Homo sapiens
cDNA FLJ16275 fis, clone NT2RI2027157, moderately
similar to Mouse SDR2 mRNA. ).
Length = 626
Score = 29.5 bits (63), Expect = 9.4
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 304 SFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQ 402
+F+ IY+ G +R G P+LG +VMT+ LQ
Sbjct: 428 AFVMPFIYRGGWSRHAGYHPYLGCIVMTLAVLQ 460
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,197,401
Number of Sequences: 237096
Number of extensions: 1696505
Number of successful extensions: 4065
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4060
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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