Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b01r
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23790.1 68416.m02990 AMP-binding protein, putative similar t...    29   4.1  

>At3g23790.1 68416.m02990 AMP-binding protein, putative similar to
           AMP-binding protein GB:CAA96521 from [Brassica napus]
           (Plant Mol. Biol. (1997) 33 (5), 911-922); contains Pfam
           AMP-binding enzyme domain PF00501; identical to cDNA
           acyl-CoA synthetase-like protein  GI:20799732
          Length = 722

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 402 INKNRNAKKTVDKEAQIFCHNTNMAVKYDN 313
           +N  R ++ +V++  QI+CH+ ++A+  DN
Sbjct: 161 VNVVRGSRSSVEELLQIYCHSESVALVVDN 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,472,984
Number of Sequences: 28952
Number of extensions: 249675
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)