Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b01f
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    23   2.8  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   3.7  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   3.7  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   4.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   4.9  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   4.9  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   6.5  

>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 343 CRSGESPPEPLGR 381
           C +GE+P +P+GR
Sbjct: 51  CATGEAPCDPVGR 63


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 120 TSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYS-TVSRS 278
           ++PRS      SS +     S  S+   ++  RLL  +P+      YS T+  S
Sbjct: 152 STPRSSPAETASSLSPQSVASTASSADHQIVDRLLSHAPIDSANQWYSQTIDNS 205


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 120 TSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYS-TVSRS 278
           ++PRS      SS +     S  S+   ++  RLL  +P+      YS T+  S
Sbjct: 143 STPRSSPAETASSLSPQSVASTASSADHQIVDRLLSHAPIDSANQWYSQTIDNS 196


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 284 NQTSRYRRIKTSG-SSQWRRLQQTEAQSFHWCRRHGDS 174
           NQ   +++   +  S++   + +  A  + W + HGDS
Sbjct: 141 NQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDS 178


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 284 NQTSRYRRIKTSG-SSQWRRLQQTEAQSFHWCRRHGDS 174
           NQ   +++   +  S++   + +  A  + W + HGDS
Sbjct: 141 NQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDS 178


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 284 NQTSRYRRIKTSG-SSQWRRLQQTEAQSFHWCRRHGDS 174
           NQ   +++   +  S++   + +  A  + W + HGDS
Sbjct: 141 NQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDS 178


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 215 PSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN 322
           P  EDV  ++ + +  +  +K  + + K+TE +E N
Sbjct: 245 PKIEDVGEDEDEDTKKEDKKKKKTIKEKYTEDEELN 280


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,154
Number of Sequences: 336
Number of extensions: 2808
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)