Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b01f
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 102 3e-22
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 36 0.028
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21) 34 0.085
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 33 0.26
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 32 0.46
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6) 31 0.60
SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1) 31 0.80
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 31 0.80
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 25 1.3
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05) 30 1.4
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 1.8
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) 30 1.8
SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087) 30 1.8
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_29507| Best HMM Match : E-MAP-115 (HMM E-Value=5.1) 29 2.4
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 29 2.4
SB_48646| Best HMM Match : Sulfotransfer_1 (HMM E-Value=8.5) 29 3.2
SB_2942| Best HMM Match : Peptidase_M10_N (HMM E-Value=0.69) 29 3.2
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 29 3.2
SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4) 29 4.2
SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05) 29 4.2
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9) 29 4.2
SB_54391| Best HMM Match : MarR (HMM E-Value=0.95) 28 5.6
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 28 5.6
SB_52306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_49258| Best HMM Match : Herpes_UL6 (HMM E-Value=0.18) 28 7.4
SB_31755| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41) 28 7.4
SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3) 28 7.4
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_31270| Best HMM Match : rve (HMM E-Value=0.0043) 27 9.8
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_130| Best HMM Match : rve (HMM E-Value=0.0043) 27 9.8
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 102 bits (244), Expect = 3e-22
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 2/162 (1%)
Frame = +2
Query: 122 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKH 301
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E ++ FD S+LKH
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKH 577
Query: 302 TETQEKNPLPDKDVVAAEKAHQNLLDGVE--HFDKTQMKHTTTEEKNPLXXXXXXXXXXX 475
TQEKNPLP + E +N D E FD T++KH TT+EK+ +
Sbjct: 578 VVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMPSQEDIKEEAV 637
Query: 476 XNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIE*ENQLEPL 601
++ +++FD +KLKH ET EKNPLP+ V++ E + E L
Sbjct: 638 DSRA--EVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVL 677
Score = 97.9 bits (233), Expect = 6e-21
Identities = 57/153 (37%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Frame = +2
Query: 122 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKH 301
+PK D +S++ F+ + L+ V T EK ++PS ED+ E ++ FD S+LKH
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKH 653
Query: 302 TETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXX 475
ET EKNPLP V+ E + L D V FD +++KH +EKNPL
Sbjct: 654 VETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTEST 713
Query: 476 XNKFLNGIENFDPTKLKHTETCEKNPLPTKDVI 574
+ ++ FD +KLKH +T EKNPLP I
Sbjct: 714 ETRA--EVKTFDHSKLKHVQTEEKNPLPDAKTI 744
Score = 97.5 bits (232), Expect = 8e-21
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Frame = +2
Query: 146 KSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNP 325
+++++ F S L+ V+T EK LP+ + +A EK + + F G+E F ++LKH ET EKNP
Sbjct: 451 RAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNP 509
Query: 326 LPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKFLNGI 499
LPD + AE + L D V FD +++KH T+EK + ++ +
Sbjct: 510 LPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSR--AEV 567
Query: 500 ENFDPTKLKHTETCEKNPLPTKDVIE*E 583
++FD +KLKH T EKNPLPT + E
Sbjct: 568 KSFDHSKLKHVVTQEKNPLPTPQTLHEE 595
Score = 89.8 bits (213), Expect = 2e-18
Identities = 55/155 (35%), Positives = 83/155 (53%), Gaps = 4/155 (2%)
Frame = +2
Query: 134 ATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTE 307
A D +++++ F+ S L+ V T EK LP+ + + E K+ D E FD ++LKH
Sbjct: 560 AIDSRAEVKSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVT 619
Query: 308 TQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKF 487
TQEK+ +P ++ + E V+ FD +++KH T EKNPL
Sbjct: 620 TQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVL 677
Query: 488 --LNGIENFDPTKLKHTETCEKNPLPTKDVIE*EN 586
++ + +FD +KLKH E EKNPLPTKD I E+
Sbjct: 678 PDVSAVASFDASKLKHVEVQEKNPLPTKDDITTES 712
Score = 80.2 bits (189), Expect = 1e-15
Identities = 49/139 (35%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Frame = +2
Query: 191 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 370
DT ++I P +E + K + KFD++ LKH +T+EKN LP + + E
Sbjct: 389 DTPQQI-WPGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDE 447
Query: 371 LLD--GVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKFLNGIENFDPTKLKHTETCE 544
D V+ F+K++++H T+EKN L F +G+E F KLKH ET E
Sbjct: 448 FPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEKRTAPF-SGVEVFQKNKLKHVETLE 506
Query: 545 KNPLPTKDVIE*ENQLEPL 601
KNPLP I E E L
Sbjct: 507 KNPLPDAQNIRAEMMPEVL 525
Score = 67.3 bits (157), Expect = 1e-11
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = +2
Query: 125 PKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHT 304
P+V D+ S + F+ S L+ V+ EK LP+ +D+ TE T+ ++ FD S+LKH
Sbjct: 674 PEVLPDV-SAVASFDASKLKHVEVQEKNPLPTKDDITTESTETRA--EVKTFDHSKLKHV 730
Query: 305 ETQEKNPLPDKDVVAAEKA 361
+T+EKNPLPD +A EKA
Sbjct: 731 QTEEKNPLPDAKTIAQEKA 749
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 110 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFD 265
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S F+
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFE 385
>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
Length = 900
Score = 34.3 bits (75), Expect = 0.085
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 185 DVDTNEKIVLPSAEDVATEKTQKSLFDG-IEKFDSSQLKHTETQEKNPLPDKDVVAAEKA 361
DV + P+ A EKT K + DG +EK+ + +T + L D DV E+
Sbjct: 341 DVIGKPPAIPPAQVQAAEEKTPKDIIDGLLEKYKEIGSQMADTSADDGLDDDDV---EEE 397
Query: 362 HQNLLDGVEHFDKTQMK 412
++LD + F T+ K
Sbjct: 398 DDDVLDEADRFRDTKRK 414
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 32.7 bits (71), Expect = 0.26
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 24/135 (17%)
Frame = +2
Query: 215 PSAEDV--ATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDKDVVAAE 355
PS+E A T L DG+ D ++ +H + T E++P +K A
Sbjct: 120 PSSEKSYQALRDTTHDLLDGLRYSDQAKEEHAKLIPKYHEIMIKTIEQDPSSEKSYQALR 179
Query: 356 KAHQNLLDGVEHFDKTQMKHT-----------TTEEKNPLXXXXXXXXXXXXNKFLNGIE 502
+LLDG++HF + + +H T E++P + L+G+
Sbjct: 180 DTTHDLLDGLQHFGQAKEEHAKLIPKYHEIMIKTIEQDPTSDKSYKALRDTTHDLLDGLR 239
Query: 503 NFDPTKLKHTETCEK 547
D K +H + K
Sbjct: 240 YSDQAKEEHAKLIPK 254
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Frame = +2
Query: 233 ATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDKDVVAAEKAHQNLLD 379
A T L DG+ D ++ +H + T E++P DK A +LLD
Sbjct: 226 ALRDTTHDLLDGLRYSDQAKEEHAKLIPKYHEIMIKTIEQDPTSDKSYKALRDTTHDLLD 285
Query: 380 GVEHFDKTQMKH 415
G+ FD+ + +H
Sbjct: 286 GLRDFDQAKEEH 297
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 31.9 bits (69), Expect = 0.46
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +2
Query: 113 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQ 292
L DL +V +LKS+ EG CL D++ + DV E I + + +
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKEHENLKSAVSISEGELLK 1183
Query: 293 LKHTETQEKNPLPDK 337
K+T EK K
Sbjct: 1184 FKNTLQSEKEEFEKK 1198
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +2
Query: 179 LRDVDTNEKIVLPSAEDV---ATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVA 349
+ D+ NE+ + P ED+ ++ ++L DG++K K ++ Q + L D ++++
Sbjct: 663 VEDISENEEDIDPGKEDIDYDGDDEVNRAL-DGLQKSTFHYNKTSDKQAISSLKDPNLIS 721
Query: 350 AEKAHQNLLDGV 385
+ A ++L+D V
Sbjct: 722 SITAAKDLMDNV 733
>SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6)
Length = 692
Score = 31.5 bits (68), Expect = 0.60
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 24/135 (17%)
Frame = +2
Query: 215 PSAEDV--ATEKTQKSLFDGIEKFDSSQLKHT-----------ETQEKNPLPDKDVVAAE 355
PS+E A T L DG+ FD ++ +H +T +++P +K A
Sbjct: 543 PSSEKSYQALRDTTHDLLDGLRYFDQAKEEHAKLIPKYHEIMIKTIKQDPSSEKSYQALR 602
Query: 356 KAHQNLLDGVEHFDKTQMKHT-----------TTEEKNPLXXXXXXXXXXXXNKFLNGIE 502
+LLDG+ F + + +H T E++P + L+G+
Sbjct: 603 DTTHDLLDGLRDFGQAKEEHAKLIPKYHEIMIKTIEQDPTSDKSYQALRDTTHDLLDGLR 662
Query: 503 NFDPTKLKHTETCEK 547
F+ K +H + K
Sbjct: 663 YFEQAKEEHAKLIPK 677
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Frame = +2
Query: 305 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT-----------TTEEKNPLXXX 451
+T E++P +K A +LLDG+ +FD+ + +H T +++P
Sbjct: 537 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQAKEEHAKLIPKYHEIMIKTIKQDPSSEK 596
Query: 452 XXXXXXXXXNKFLNGIENFDPTKLKHTETCEK 547
+ L+G+ +F K +H + K
Sbjct: 597 SYQALRDTTHDLLDGLRDFGQAKEEHAKLIPK 628
>SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)
Length = 766
Score = 31.1 bits (67), Expect = 0.80
Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 22/127 (17%)
Frame = +2
Query: 233 ATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDKDVVAAEKAHQNLLD 379
A T L DG+ F ++ +H + E++P +K A +LLD
Sbjct: 135 ALRDTTHDLVDGLRYFGQAEEEHAKLIPKYHEIMIKNIEQDPKSEKSYQALRDTTHDLLD 194
Query: 380 GVEHFDKTQMKHT-----------TTEEKNPLXXXXXXXXXXXXNKFLNGIENFDPTKLK 526
G+ +FD+ + +H E++P + L+G+ FD K +
Sbjct: 195 GLRYFDQAKEEHAKLIPKYHEIMIKNIEQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEE 254
Query: 527 HTETCEK 547
H + K
Sbjct: 255 HAKLIPK 261
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 22/127 (17%)
Frame = +2
Query: 233 ATEKTQKSLFDGIEKFDSSQLKHT-----------ETQEKNPLPDKDVVAAEKAHQNLLD 379
A T L DG+ FD ++ +H + E++P +K A +L+D
Sbjct: 86 ALRDTTHDLLDGLRYFDQAKEEHAKLIPKYHEIMIKNIEQDPKSEKSYQALRDTTHDLVD 145
Query: 380 GVEHFDKTQMKHT-----------TTEEKNPLXXXXXXXXXXXXNKFLNGIENFDPTKLK 526
G+ +F + + +H E++P + L+G+ FD K +
Sbjct: 146 GLRYFGQAEEEHAKLIPKYHEIMIKNIEQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEE 205
Query: 527 HTETCEK 547
H + K
Sbjct: 206 HAKLIPK 212
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Frame = +2
Query: 233 ATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDKDVVAAEKAHQNLLD 379
A T L DG+ F ++ +H + E++P +K A +LLD
Sbjct: 37 ALRDTTHDLVDGLRYFGQAEEEHAKLIPKYHEIMIKNIEQDPKSEKSYQALRDTTHDLLD 96
Query: 380 GVEHFDKTQMKH 415
G+ +FD+ + +H
Sbjct: 97 GLRYFDQAKEEH 108
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Frame = +2
Query: 233 ATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDKDVVAAEKAHQNLLD 379
A T L DG+ F ++ +H + E++P +K A +LLD
Sbjct: 282 ALRDTTHDLVDGLRYFGQAEEEHAKLIPKYHEIMIKNIEQDPKSEKSYQALRDTTHDLLD 341
Query: 380 GVEHFDKTQMKH 415
G+ +FD+ + +H
Sbjct: 342 GLRYFDQAKEEH 353
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 221 AEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLL 376
++D EKT+ S+ + + DSS T+EK +KD E+ ++L+
Sbjct: 1546 SDDGTDEKTEDSMQEDAKDLDSSNTASDTTKEKGKNKEKDKTVLERWEESLM 1597
>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
Length = 590
Score = 24.6 bits (51), Expect(2) = 1.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 400 DSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHREL 507
DSD+ +DD +STA R R + + P R L
Sbjct: 281 DSDDDYDDREGDSTAKIRKGRRSDTDDLSPNPRRLL 316
Score = 24.2 bits (50), Expect(2) = 1.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 283 FEPAEAHRDSGEE 321
FEP E H DSG+E
Sbjct: 266 FEPMEIHDDSGDE 278
>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
Length = 385
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = -3
Query: 247 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGEVFQGGS 104
GLL+GD+F R K N+ I VD T G + FEL + + E+ GS
Sbjct: 74 GLLAGDIFRRPKANILISVDGV-TKG-DKFELPAKASFPVQEMAGLGS 119
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 92 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 238
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
Length = 385
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 212 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLP 331
L S D EKT D +E+F S +H T +KNPLP
Sbjct: 194 LSSRSDHVQEKT-----DRLEQFSSQTGRHINTTKKNPLP 228
>SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = -3
Query: 247 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFEL 152
GLL+GD+F R K N+ I VD T G + FEL
Sbjct: 51 GLLAGDIFRRPKANILISVDGV-TKG-DKFEL 80
>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 242 KTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 415
K ++ L I K+ +K T E++P +K A +LLDG+ +FD+ +H
Sbjct: 549 KGKEELAKLIPKYHEIMIK---TIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 603
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Frame = +2
Query: 215 PSAEDV--ATEKTQKSLFDGIEKFDSSQLKHT-----------ETQEKNPLPDKDVVAAE 355
PS+E A T L DG+ FD + +H + E++P +K A
Sbjct: 573 PSSEKSYQALRDTTHDLLDGLRYFDQASKEHAKLIPKYHEILIKKIEQDPSSEKRYQALR 632
Query: 356 KAHQNLLDGVEHFDKTQMKH 415
NL DG+ FD + +H
Sbjct: 633 DTTYNLFDGLRDFDHAKEEH 652
>SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)
Length = 556
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 242 KTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 415
K ++ L I K+ +K T E++P +K A +LLDG+ +FD+ +H
Sbjct: 474 KGKEELAKLIPKYHEIMIK---TIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 528
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 433 ESTAPDRSYRSGEGKEQIPERHR 501
+STA D SY SG G E P HR
Sbjct: 483 DSTASDSSYDSGSGPELSPNEHR 505
>SB_29507| Best HMM Match : E-MAP-115 (HMM E-Value=5.1)
Length = 198
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +1
Query: 304 RDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG--EGK 477
RD+ + + C R R T +DS D ++ST + ++ +G+
Sbjct: 27 RDTRDRDEDARDCDRGTPDRDSKCDRD-TRDRDSKRDRDTHDRDSTRDEDTHEIDIPDGR 85
Query: 478 EQIPERHRELRSH*AEAHGNVREEPAPHKGRH*VRESA 591
E+ E +R S A + + RE A ++GR+ + A
Sbjct: 86 ERDHEDNRSRASSRASSRASSRERDARNRGRYKIERDA 123
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 40 ESSIPFLIKNILIHNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 174
E S+PF N N ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_48646| Best HMM Match : Sulfotransfer_1 (HMM E-Value=8.5)
Length = 674
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +2
Query: 185 DVDTNEKIVLPSAEDVATEK-----TQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVA 349
D+ ++VLP+ +DV K + GI + DSS + + + +PD ++
Sbjct: 341 DLAQQLQVVLPNVKDVTFTPFCWKFAYKFEYTGITESDSS-MSLARVRRTSSVPDSLQLS 399
Query: 350 AEKAHQNLLDGVEHFDKTQMKHTTTE 427
AE ++ V+H +K + TT +
Sbjct: 400 AELLSVGSVESVDHREKYPLNKTTAD 425
>SB_2942| Best HMM Match : Peptidase_M10_N (HMM E-Value=0.69)
Length = 123
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -2
Query: 380 RPRGSGGLSPLRQHLCPEAGSSPESRCASAGSNQTSRYRR-IKTSGSSQWRRLQQT 216
RP GG E S S+CA + S SR RR + + QW R ++T
Sbjct: 66 RPTLDGGRRTSHTTSSSETISPSRSKCACSNSRSASRPRRHLDFTSQEQWTRKRRT 121
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/71 (16%), Positives = 34/71 (47%)
Frame = +1
Query: 304 RDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 483
++ G+ + ++ R E P + L + ++ D+ + +E PD+ + +++
Sbjct: 829 QEQGKPDKNKEKQDREQEKPDKDLEKQYQKQEKPDKGQEKQDREQEKPDKDQEKQDREQE 888
Query: 484 IPERHRELRSH 516
P++ +E + H
Sbjct: 889 KPDKDQEKQDH 899
>SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)
Length = 426
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/72 (27%), Positives = 27/72 (37%)
Frame = +1
Query: 289 PAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 468
P+ RDS E S + + SPP S S + DD R R R
Sbjct: 51 PSSLGRDSSERRPSARVSSDNSRSPPHRRDSSRRSHSPSRRSSDD-RSTDARDRRDRRRS 109
Query: 469 EGKEQIPERHRE 504
+E+ P R R+
Sbjct: 110 SSRERRPPRDRD 121
>SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)
Length = 492
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 242 SQWRRLQQTEAQSFHWCRRHGDSWC*SLRADSSGLWRPW 126
S WRRLQ+ A S + + D +L A+ G W PW
Sbjct: 419 SLWRRLQELNATSLEYRLQPEDPRSIAL-AERLGRWEPW 456
>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
Length = 646
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -3
Query: 487 EFVLFLLRFDSFDRGQWILFFRRRVLHLSLVEVFNSVQEVL 365
+FVL++LRF +D I ++ + HL+LVE + +Q+ L
Sbjct: 295 DFVLYMLRFSDYD----IYTGKKSIAHLTLVEFESWLQDEL 331
>SB_54391| Best HMM Match : MarR (HMM E-Value=0.95)
Length = 837
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Frame = +2
Query: 314 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT-----------TTEEKNPLXXXXXX 460
E++P +K A +LLDG+ +FD+ +H E++P
Sbjct: 308 EQDPSSEKSYQALRDTTHDLLDGLRYFDQAWKEHAKLIPKYHEIMIKNIEQDPSSEKSCK 367
Query: 461 XXXXXXNKFLNGIENFDPTKLKHTETCEK 547
+ L+G+ +F +K +H + K
Sbjct: 368 ALRHTTHDLLDGLRDFGQSKEEHAKLIPK 396
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 251 KSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTE 427
KS+F + + + TET+E NP D AE+ ++ +G T+ K T E
Sbjct: 276 KSVFKRNRPTEPASVPSTETKEANPNVTADTKQAEQNEGSMSEGTTSKTITENKTTNME 334
>SB_52306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +1
Query: 289 PAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 468
P + HR S + +G+R G+ PE R ++ + E + T G
Sbjct: 75 PEKQHRGSVHKRGNGER----GQGSPEKQQRGSVHKRGNGEGKSSPENQHTGSIYKRGKG 130
Query: 469 EGKEQIPERHR 501
EGK +HR
Sbjct: 131 EGKSSPENQHR 141
>SB_49258| Best HMM Match : Herpes_UL6 (HMM E-Value=0.18)
Length = 899
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Frame = +2
Query: 314 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT-----------TTEEKNPLXXXXXX 460
E++P +K A +LLDG+ +FD+ +H E++P
Sbjct: 186 EQDPSSEKSYQALRDTTHDLLDGMRYFDQAWKEHAKLIPKYHEIMIKNIEQDPSSEKSYQ 245
Query: 461 XXXXXXNKFLNGIENFDPTKLKHTETCEK 547
+ L+G+ +F K +H + K
Sbjct: 246 ALRHTTHYLLDGLRDFGQAKEEHAKLIPK 274
>SB_31755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Frame = +2
Query: 314 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT-----------TTEEKNPLXXXXXX 460
E++P +K A +LLDG+ +FD+ +H E++P
Sbjct: 189 EQDPSSEKSYQALRDTTHDLLDGMRYFDQAWKEHAKLIPKYHEIMIKNIEQDPSSEKSCK 248
Query: 461 XXXXXXNKFLNGIENFDPTKLKHTETCEK 547
+ L+G+ +F K +H + K
Sbjct: 249 ALRHTTHDLLDGLRDFGQAKEEHAKLIPK 277
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 350 LRQHLCPEAGSSPESRCASAGSNQTSRYRR 261
L HL S P SRCA + S+ + RYRR
Sbjct: 446 LHCHLLVCNASDPNSRCAQSCSSFSRRYRR 475
>SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41)
Length = 533
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -2
Query: 287 SNQTSRYRRIKTSGSSQ-WR 231
+N+TS+YRRI+ GS Q WR
Sbjct: 62 TNRTSKYRRIRRRGSRQTWR 81
>SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3)
Length = 334
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +1
Query: 313 GEEPASGQRC----CRSGESPPEPLGRS*T-LRQDSDEAHDDGRK---ESTAPDRSYRSG 468
GEEP+S S + P P+ + + +D D+ +G + ES A DRS+ SG
Sbjct: 181 GEEPSSRTETPDLYILSNDIPTSPVDEAPLPVDEDDDDEQVNGLRMLPESVALDRSHESG 240
Query: 469 EGKEQIP 489
G +P
Sbjct: 241 RGTPHLP 247
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -1
Query: 201 SLVSTSRRQLVLKPSS*LFRSVATLGRSFREGVSLTEQAIVNQYIFDEEGDRRFVHSATL 22
SLV TS KP L+ VA +GR F V+ T+ + + EEG + H L
Sbjct: 12 SLVGTSCSNSQEKPIQRLYNVVAVVGRHFTYRVTPTDGS--KNFKITEEGKKTLPHWLAL 69
Query: 21 SD 16
+
Sbjct: 70 DE 71
>SB_31270| Best HMM Match : rve (HMM E-Value=0.0043)
Length = 479
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 191 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 370
DT+E LP ED+ KT S F ++ + + N K +V ++ Q
Sbjct: 363 DTSEPADLPEPEDILNAKTMASETRRDPCFTTNTQEMAKKVFANFGLPKHIV-SDNGPQF 421
Query: 371 LLDGVEHF-DKTQMKHTTTEEKNP 439
+ + E+F K ++HTTT +P
Sbjct: 422 VSEESENFLQKNNIRHTTTPTGHP 445
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/115 (19%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Frame = +2
Query: 86 ACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT------ 247
A + + P KD + T K Q + ++ E+ V P+ +++A ++
Sbjct: 1037 AATQMEEPESKDSTQEKTQEKDQSQQAPEQAQETQESQEESVKPTQQELAVQQATPLNQQ 1096
Query: 248 --QKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQ 406
Q+S +EK S + +TQ+K + + ++ ++L V+ ++Q
Sbjct: 1097 QIQESSTQVLEKQQSQEQPVKQTQQKTDVQQATLQEPQRQEESLTKQVQETQQSQ 1151
>SB_130| Best HMM Match : rve (HMM E-Value=0.0043)
Length = 297
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 191 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 370
DT+E LP ED+ KT S F ++ + + N K +V ++ Q
Sbjct: 181 DTSEPADLPEPEDILNAKTMASETRRDPCFTTNTQEMAKKVFANFGLPKHIV-SDNGPQF 239
Query: 371 LLDGVEHF-DKTQMKHTTTEEKNP 439
+ + E+F K ++HTTT +P
Sbjct: 240 VSEESENFLQKNNIRHTTTPTGHP 263
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,862,723
Number of Sequences: 59808
Number of extensions: 406934
Number of successful extensions: 1584
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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