Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b01f
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 79 2e-15
Z93383-3|CAB07625.1| 309|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 28 4.9
U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical pr... 28 4.9
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 28 4.9
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 28 4.9
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical pr... 27 8.6
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 79.4 bits (187), Expect = 2e-15
Identities = 53/144 (36%), Positives = 71/144 (49%), Gaps = 1/144 (0%)
Frame = +2
Query: 110 SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDS 286
++ +LPK+ +L + EG L+ V+T EK VLP+ EDVA EK IE FDS
Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDS 59
Query: 287 SQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXX 466
++L T +EK LP D + EK H L D + +F +K T T EKN L
Sbjct: 60 TKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVL----PSPT 115
Query: 467 XXXXNKFLNGIENFDPTKLKHTET 538
K L +FD + L H ET
Sbjct: 116 DVAREKTLQMAASFDKSALHHVET 139
Score = 69.3 bits (162), Expect = 2e-12
Identities = 39/102 (38%), Positives = 51/102 (50%)
Frame = +2
Query: 290 QLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXX 469
+LK ET EKN LP K+ VA EK H + +EHFD T++ T +EK L
Sbjct: 23 ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82
Query: 470 XXXNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIE*ENQLE 595
+ + I NF LK TET EKN LP+ + E L+
Sbjct: 83 KQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQ 124
Score = 36.3 bits (80), Expect = 0.019
Identities = 27/83 (32%), Positives = 37/83 (44%)
Frame = +2
Query: 341 VVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKFLNGIENFDPTK 520
V K +Q L V + ++K T EKN L + ++ IE+FD TK
Sbjct: 4 VTELPKMNQELAGAVR--EGLELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTK 61
Query: 521 LKHTETCEKNPLPTKDVIE*ENQ 589
L T EK LP+ D I+ E Q
Sbjct: 62 LHSTPVKEKIVLPSADDIKQEKQ 84
>Z93383-3|CAB07625.1| 309|Caenorhabditis elegans Hypothetical
protein F54B8.3 protein.
Length = 309
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = -3
Query: 535 FRVLQLSGIEVLDAVQEFVLFLLRFDSFDRGQWILFFRR-----RVLHLSLVEVFNSVQE 371
F V+ L+ ++V A++ F ++ DR Q I +F+R LH+ VE++NS +
Sbjct: 99 FLVIALNDLKV--ALKHVSCFAYVDNTLDRYQNITYFKRFLKSEETLHVEEVEIWNSYVD 156
Query: 370 VLVGFLRC 347
++ LRC
Sbjct: 157 DVMTILRC 164
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
protein C05C9.3 protein.
Length = 1225
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/66 (24%), Positives = 27/66 (40%)
Frame = +2
Query: 218 SAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFD 397
S K + L +E S H + ++KN D ++ E Q L+G F+
Sbjct: 367 SCNSTIEHKEAEELISHLELESSQNSIHNDNRKKNEDYDMEISEIETITQRQLEGYGTFN 426
Query: 398 KTQMKH 415
+MK+
Sbjct: 427 SPEMKN 432
>U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical
protein K09H11.4 protein.
Length = 630
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/96 (21%), Positives = 40/96 (41%)
Frame = +1
Query: 286 EPAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS 465
+P E +D ++ G++ R + E +S ++ +++D RK+ +R R
Sbjct: 141 DPTEV-KDRFDKEREGRKQQRGDDGEEEDHPKS---QRGIQRSNEDDRKDEEEEERPRRP 196
Query: 466 GEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH 573
+ + E E R HG EEP+ + H
Sbjct: 197 HQRRGDSYEDEEEDRKKYRPRHGEEEEEPSREREHH 232
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 295 EAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKE 435
E + E+ + R E PEPL R D DE DDG ++
Sbjct: 2493 EDEEEEAEDDDQDEDDVRHVEQNPEPLARRLFEEDDDDEEDDDGDED 2539
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 45 FYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 224
F P+P + + + P TSP+SP + S++ P VSVTS P ++
Sbjct: 19 FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75
Query: 225 KTSPLRR 245
+P+++
Sbjct: 76 TVTPIQQ 82
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +1
Query: 394 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH 573
R S + DD R DR+ R + + ER RE R + E RE AP + +
Sbjct: 414 RSSSKKHRDDRRDRDRERDRNDRDRNREREREERERENRDN--ERGRRERESEAPRRRKE 471
Query: 574 *VRES 588
R S
Sbjct: 472 DDRRS 476
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +1
Query: 394 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH 573
R S + DD R DR+ R + + ER RE R + E RE AP + +
Sbjct: 408 RSSSKKHRDDRRDRDRERDRNDRDRNREREREERERENRDN--ERGRRERESEAPRRRKE 465
Query: 574 *VRES 588
R S
Sbjct: 466 DDRRS 470
>Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical
protein T23F11.3b protein.
Length = 366
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 332 PEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWRRL 225
P++GSS E+ + + + S R + TS SSQ+ ++
Sbjct: 76 PKSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111
>Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical
protein T23F11.3a protein.
Length = 356
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 332 PEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWRRL 225
P++GSS E+ + + + S R + TS SSQ+ ++
Sbjct: 76 PKSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,782,525
Number of Sequences: 27780
Number of extensions: 296606
Number of successful extensions: 1163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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