Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b01f
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29470.1 68414.m03605 dehydration-responsive protein-related ...    33   0.16 
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ...    31   0.49 
At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recogniti...    30   1.5  
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si...    30   1.5  
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi...    30   1.5  
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)...    30   1.5  
At1g23230.1 68414.m02906 expressed protein                             29   3.5  
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f...    28   4.6  
At1g19000.2 68414.m02364 myb family transcription factor similar...    28   6.1  
At1g19000.1 68414.m02363 myb family transcription factor similar...    28   6.1  
At5g12410.1 68418.m01459 THUMP domain-containing protein contain...    27   8.0  
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f...    27   8.0  
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low...    27   8.0  

>At1g29470.1 68414.m03605 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 26/119 (21%), Positives = 51/119 (42%)
 Frame = +2

Query: 80  TMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSL 259
           T +   S     KD+    +D KS+     +    D    E  V+    +  T+  +   
Sbjct: 45  TESIDFSANERTKDVDTTKSDFKSEEVDRGSKSFPDEKNEETEVVTETNEEKTDPEKSGE 104

Query: 260 FDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKN 436
            +  EK +S++ +  E  +KN   D+     EK  ++  D  +  +KTQ++ ++ E K+
Sbjct: 105 ENSGEKTESAE-ERKEFDDKNGDGDRKNGDGEKDTESESDETKQKEKTQLEESSEENKS 162


>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
           SP|Q07283 Trichohyalin {Homo sapiens}
          Length = 1400

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = +2

Query: 182 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKA 361
           R+ + NE+ +  + E    E+  K+  +  EK    Q+K  + +E+N    K+V+   + 
Sbjct: 744 REKEENERRIKEAREKAELEQRLKATLEQEEK--ERQIKERQEREENERRAKEVLEQAEN 801

Query: 362 HQNLLDGVEHFD-KTQMKHTTTEEKN 436
            + L + +E  + + ++K T  +E+N
Sbjct: 802 ERKLKEALEQKENERRLKETREKEEN 827


>At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein contains Pfam profile
           PF02493: MORN repeat
          Length = 871

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +2

Query: 239 EKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT 418
           EK+ K + DG+EK+   + K  E +++    + ++V AE     L + +E  D+   K  
Sbjct: 581 EKSVKPMLDGLEKWTEEKKKAYEERKEMIQQELELVEAEIC---LEEAIEDMDEELKKKE 637

Query: 419 TTEEK 433
             EEK
Sbjct: 638 QEEEK 642


>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase isoform 1, Citrus
           unshiu, PIR:S72648
          Length = 894

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
 Frame = +2

Query: 23  RVAECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 202
           R+A C     P   ++  F  + S S + SL+D+  ++ +LK  L+G  +     VDTN 
Sbjct: 513 RIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTNL 570

Query: 203 KIVLPSAEDVA-TEKTQKSLFD---GIEKFDS 286
                +AE  A  EK   +L       EKFDS
Sbjct: 571 DAEDRAAERKAEVEKAVSTLAQKSKPTEKFDS 602


>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 786

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +2

Query: 80  TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQ 250
           T   S+ +  +  DLPK+  +  SQ E     + S    +DT E ++ P+AED   E   
Sbjct: 74  TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133

Query: 251 KS 256
            S
Sbjct: 134 SS 135


>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
           nearly identical to SF2/ASF-like splicing modulator
           Srp30 [Arabidopsis thaliana] GI:4775270
          Length = 268

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 123 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRS 278
           SP   ++ R  S++  P+ S +S        R +  ++ PL R RSLYS+VSRS
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRS 246


>At1g23230.1 68414.m02906 expressed protein
          Length = 1615

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 566 PLWGAGSSRTFPCASA*WDRSSRC-RSGICSFPSP 465
           PL+G   + + P  S  W+R+ RC R  I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427


>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 271

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 244 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 125
           ++ G+    +KHNL IG+D    AG  + +  LQ C ++G
Sbjct: 41  IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79


>At1g19000.2 68414.m02364 myb family transcription factor similar to
           MybSt1 GI:7705206 from [Solanum tuberosum]
          Length = 285

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 242 KTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 379
           + + SLFD   E      ++   TQE +PLP+ ++ + ++A Q   D
Sbjct: 158 RRRSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTD 204


>At1g19000.1 68414.m02363 myb family transcription factor similar to
           MybSt1 GI:7705206 from [Solanum tuberosum]
          Length = 285

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 242 KTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 379
           + + SLFD   E      ++   TQE +PLP+ ++ + ++A Q   D
Sbjct: 158 RRRSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTD 204


>At5g12410.1 68418.m01459 THUMP domain-containing protein contains
           Pfam profile PF02926: THUMP domain
          Length = 376

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +2

Query: 191 DTNEKIVLPSAEDVATEKTQKSLFDGI-EKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQ 367
           D ++ +V     D+  EK   S  +G+ ++ +  ++    + E   L + + V  E+   
Sbjct: 110 DGDKAVVSEGGNDLVNEKEIAS--EGVNDQVNEKEIASEGSCEVKQLAENETVKEEEDKG 167

Query: 368 NLLDGVEHFDKTQMKHTTTEEKNPL 442
           N  +G    D+   K T TEE NPL
Sbjct: 168 NQKNGG---DEPPRKKTCTEEANPL 189


>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
           family protein similar to pVHL-interacting
           deubiquitinating enzyme 1 type II [Homo sapiens]
           GI:18698435; contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 974

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 316 EEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEG 474
           E     +R     +SPP PLG +  L   ++   DD  +E     +S   G G
Sbjct: 446 EREVKRKRVMERSDSPPPPLGFNNPLLPLANTYDDDDEEEENEQKKSQARGNG 498


>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
           similarity to DNA polymerase kappa [Mus musculus]
           GI:14279087; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 785

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 247 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 122
           GL  G++    + +++    +T +AGV A  L  +VC D+ +
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,162,835
Number of Sequences: 28952
Number of extensions: 283362
Number of successful extensions: 1100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)