Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a24r
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05030.1 68415.m00525 hypothetical protein 32 0.31
At2g36250.2 68415.m04450 chloroplast division protein FtsZ (FtsZ... 29 2.2
At2g36250.1 68415.m04449 chloroplast division protein FtsZ (FtsZ... 29 2.2
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ... 29 3.8
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ... 29 3.8
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein 29 3.8
At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to ... 28 6.6
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con... 28 6.6
At2g17240.1 68415.m01991 expressed protein 28 6.6
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 28 6.6
At5g67300.1 68418.m08486 myb family transcription factor contain... 27 8.8
At5g01280.1 68418.m00037 expressed protein 27 8.8
At3g24506.1 68416.m03075 expressed protein 27 8.8
>At2g05030.1 68415.m00525 hypothetical protein
Length = 205
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 57 SDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQS 179
S G+RS +P+S G +DHR G +DHRR + Q+
Sbjct: 65 SSGERS-LPRSSTSTDDRVGYQDHRRDQGQDQDHRRDQQQN 104
>At2g36250.2 68415.m04450 chloroplast division protein FtsZ
(FtsZ2-1) identical to chloroplast division protein
AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
division protein FtsZ [Arabidopsis thaliana] GI:14195704
Length = 478
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -1
Query: 360 AGANYNLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPI---NRAITA 190
A +NYN +V+ G G+ ++ ++ V+ W +N + R P+ NR
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPVLPDNRLQIG 171
Query: 189 NMLCSGVLDVGGRDQ 145
L G L GG +
Sbjct: 172 KELTRG-LGAGGNPE 185
>At2g36250.1 68415.m04449 chloroplast division protein FtsZ
(FtsZ2-1) identical to chloroplast division protein
AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
division protein FtsZ [Arabidopsis thaliana] GI:14195704
Length = 478
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -1
Query: 360 AGANYNLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPI---NRAITA 190
A +NYN +V+ G G+ ++ ++ V+ W +N + R P+ NR
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPVLPDNRLQIG 171
Query: 189 NMLCSGVLDVGGRDQ 145
L G L GG +
Sbjct: 172 KELTRG-LGAGGNPE 185
>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
contains Pfam:PF00320 GATA zinc finger domain
Length = 470
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 53 GKRRSAQYCPQEQTPTRTRLWRRGPPESP 139
GK+ +C TP LWR GPPE P
Sbjct: 2 GKQGPCYHCGVTSTP----LWRNGPPEKP 26
>At5g03360.1 68418.m00289 DC1 domain-containing protein contains Pfam
profile PF03107: DC1 domain
Length = 1610
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 93 HQRGRGCGGEDHRSHPGTGRDHRRPKH 173
H R RGC GE+H+ + D + P H
Sbjct: 1223 HFRCRGCNGENHKGYEQAPVDVKHPLH 1249
>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
Length = 510
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 53 GKRRSAQYCPQEQTPTRTRLWRRGPPESP 139
GK+ +C TP LWR GPPE P
Sbjct: 2 GKQGPCYHCGVTNTP----LWRNGPPEKP 26
>At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to
Ca(2+)-dependent nuclease [Arabidopsis thaliana]
GI:7684292; supporting cDNA gi|7684291|dbj|D84226.1|
Length = 323
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = +2
Query: 56 KRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSR 154
KR E R LW PE PW W +
Sbjct: 285 KRAELAKWENEARQKRVGLWASSNPEKPWEWRK 317
>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase BGQ60 precursor GB:A57512
[Hordeum vulgare]; similar to beta-mannosidase enzyme
(GI:17226270) [Lycopersicon esculentum]
Length = 512
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 303 HPNQQPKQLGYHQDCN 350
HP +PK LGY QD N
Sbjct: 356 HPTTKPKDLGYQQDWN 371
>At2g17240.1 68415.m01991 expressed protein
Length = 140
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +2
Query: 56 KRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTPE 178
+R Q P +L RR P + P W RP + P+
Sbjct: 50 RRNRNQLQVVSMAPEEEKLTRRNPLDFPIEWERPKPGRRPD 90
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 12 GSKR*NGKRER*HQGSDGQRSTVPKSRHQ-RGRGCGGEDHRSHPGTGRDHRR 164
G + +G+ + +G G R R RGRG GG+ R + G G H R
Sbjct: 39 GDRGYSGRGDGHGRGGGGDRGRGYSGRGDGRGRGGGGDRGRGYSGRGDGHGR 90
>At5g67300.1 68418.m08486 myb family transcription factor contains
PFAM profile: myb DNA binding domain PF00249
Length = 305
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 105 RGCGGEDHRSHPGTGRDHRRPK 170
R CGG DHR + G+ DHR K
Sbjct: 105 RKCGGYDHRGYDGS-EDHRPVK 125
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +2
Query: 38 RTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTS 166
++ TP KR S T TR L S WSRP +S
Sbjct: 103 KSKTPAKRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRPSSS 145
>At3g24506.1 68416.m03075 expressed protein
Length = 149
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 95 PTRTRLWRRGPPESPWHWSRPPTSKTPE 178
P +L RR P + P W RP + P+
Sbjct: 71 PEEEKLTRRNPLDFPIEWERPKPGRRPD 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.129 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,232,906
Number of Sequences: 28952
Number of extensions: 374779
Number of successful extensions: 916
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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