Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a22f
         (622 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024333-1|ABC86395.1|  157|Drosophila melanogaster IP10176p pro...    29   3.8  
AE014296-2106|AAF49950.3|  295|Drosophila melanogaster CG9760-PB...    29   3.8  
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       28   8.9  

>BT024333-1|ABC86395.1|  157|Drosophila melanogaster IP10176p
           protein.
          Length = 157

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 527 SHIYSYNSTRNTLYFNTIYSNYWNHQKYYS 616
           SH Y++ +  N  Y+N  Y N WNHQ +++
Sbjct: 11  SHYYAWWAYIN--YYNDDYYNQWNHQLFFT 38


>AE014296-2106|AAF49950.3|  295|Drosophila melanogaster CG9760-PB
           protein.
          Length = 295

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 527 SHIYSYNSTRNTLYFNTIYSNYWNHQKYYS 616
           SH Y++ +  N  Y+N  Y N WNHQ +++
Sbjct: 118 SHYYAWWAYIN--YYNDDYYNQWNHQLFFT 145


>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 513 IKNTNHIFIHIIPQGTPYILIPFIVIIGTIRNII 614
           + + +HI  + IPQG+P  ++ F++ I  I +I+
Sbjct: 630 VTSNSHILHNGIPQGSPLSVVLFMIAIEDINDIV 663


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,958,264
Number of Sequences: 53049
Number of extensions: 239470
Number of successful extensions: 522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)