Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a21r
(739 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 45 6e-05
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 41 8e-04
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 35 0.069
AL023842-4|CAA19517.2| 229|Caenorhabditis elegans Hypothetical ... 31 0.64
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 31 0.85
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 28 7.9
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 44.8 bits (101), Expect = 6e-05
Identities = 57/241 (23%), Positives = 98/241 (40%), Gaps = 17/241 (7%)
Frame = -2
Query: 681 LAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRNAQARQFTLAFGTANIFSGGTRVT 502
+A LV NG+ +CGA+++ + VTAAHC Q R F N + +
Sbjct: 51 MAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVYVREPKN--NRERSFS 106
Query: 501 TSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQRINLA---SXXXXXXXXXXXXXXXGR 331
++H YN +ND+A++ + I+ + L S
Sbjct: 107 VKEAYIHSGYNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKLLKQYKNGVVIGYGLT 166
Query: 330 TSDAASG----ANNQQKRQVSLQVITNAVCARTYG-----NSVIIGSTLCVSGANGRSTC 178
+ +SG N+Q + S+ +I++ C +T+ + I G +C +GA T
Sbjct: 167 LGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQIC-AGAYLHGTA 225
Query: 177 XXXXXXXXXXXXXXGRQL-IGITSFGSD--RGC--QRGYPAGFARVTSFNSWIRARI*MT 13
G + IGITS+G+D G Q +P + R++ + WI+ I T
Sbjct: 226 PGDSGGPLLIHKSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTRISKYVPWIQGVIGKT 285
Query: 12 T 10
+
Sbjct: 286 S 286
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 41.1 bits (92), Expect = 8e-04
Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 6/207 (2%)
Frame = -2
Query: 636 CGASLLTNTRSVTAAHCWRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNL 457
CG SL+ +TAAHC+ ++ + +++ G SG T +V +H YN+
Sbjct: 84 CGGSLIDPNFVLTAAHCF-AKDRRPTSYSVRVGGHRSGSGSPHRVT-AVSIHPWYNIGFP 141
Query: 456 NN-DVAIIN-HNHVGFNNNIQRINLASXXXXXXXXXXXXXXXGRTSDAASGANNQQKRQV 283
++ D AI+ H V + + I L S ++ S + R++
Sbjct: 142 SSYDFAIMRIHPPVNTSTTARPICLPSLPAVENRLCVVTGWG--STIEGSSLSAPTLREI 199
Query: 282 SLQVITNAVCAR--TYGNSVIIGSTLCVSGANGR-STCXXXXXXXXXXXXXXGRQLIGIT 112
+ +++ C+ Y + + S LC + G+ +C +L G+
Sbjct: 200 HVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSYGKIDSCQGDSGGPLMCARDGHWELTGVV 259
Query: 111 SFGSDRGCQR-GYPAGFARVTSFNSWI 34
S+G GC R G P + V S ++WI
Sbjct: 260 SWGI--GCARPGMPGVYGNVHSASTWI 284
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 34.7 bits (76), Expect = 0.069
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = -2
Query: 696 GAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-RTRNAQARQFTLAFGTANIFS 520
GA P A L T CGAS+L T +TAAHC+ + + + N
Sbjct: 36 GAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTD 93
Query: 519 GGTRV-TTSSVHLHGSYNMNNLNNDVAIINHNHVG--FNNNIQRINLAS 382
G ++ +H + Y + ++D+AI+ + G FN Q I L S
Sbjct: 94 GNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPS 141
>AL023842-4|CAA19517.2| 229|Caenorhabditis elegans Hypothetical
protein Y44A6D.3 protein.
Length = 229
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 522 SGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQ 400
+ R+ S H G +NN+NN+ NHNH NNNIQ
Sbjct: 68 AAAARLNAQSSHSSGPARLNNMNNN-NNNNHNH-SKNNNIQ 106
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 31.1 bits (67), Expect = 0.85
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 681 LAGLVIALTNGRTSICGASLLTNTRSVTAAHC 586
LA ++ +G T++CG L+ + +T+AHC
Sbjct: 31 LASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 499 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 585
GG PG AG+ S G+ G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 499 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 585
GG PG AG+ S G+ G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.131 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,209,261
Number of Sequences: 27780
Number of extensions: 221732
Number of successful extensions: 720
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -