Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a21r
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    29   2.4  
At5g03270.1 68418.m00276 expressed protein contains Pfam profile...    27   9.8  
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase...    27   9.8  

>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
 Frame = -2

Query: 738 STVPGLWVVLPPNAGAHPHLAGLVIALTNGRTSICGASLL-----TNTRSVTAAH---CW 583
           S  PG  VV+PP     P L  + +++  GR  I G S+      +    +  A     W
Sbjct: 512 SAFPG--VVVPP-----PRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLIDPAEEKPSW 564

Query: 582 RTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLN 454
           R  N   +   LA+G +    GGTRV     H    + +N L+
Sbjct: 565 RILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHTGEEWILNELH 607


>At5g03270.1 68418.m00276 expressed protein contains Pfam profile
           PF03641: decarboxylase family protein
          Length = 229

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = -2

Query: 636 CGASLLTNTRSVTAAHCWRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNL 457
           CG+S   N  S   A     +    R+  L +G  +I  G   + + +VH  G +N NN 
Sbjct: 25  CGSSN-GNKASYQDAAIDLAKELVMRKIDLVYGGGSI--GLMGLVSQAVHDGGRHNNNNN 81

Query: 456 NNDVAIINHN 427
            ND A+  H+
Sbjct: 82  GNDDALFCHS 91


>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK9) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 310

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 300 QQKRQVSLQVITNAVCARTYGNSVIIGSTLCVSGANGRSTC 178
           +++RQ++L++    +  R +  S    +T  V+G NG S C
Sbjct: 5   RERRQLNLRLPLPPISDRRFSTSSSSATTTTVAGCNGISAC 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,718,125
Number of Sequences: 28952
Number of extensions: 207385
Number of successful extensions: 703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)