Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a20r
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.6  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 276 IYKKDLIIIS*SCTLTR 326
           ++ +DLII+   CT+TR
Sbjct: 220 MFNRDLIIVQTGCTITR 236


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 276 IYKKDLIIIS*SCTLTR 326
           ++ +DLII+   CT+TR
Sbjct: 220 MFNRDLIIVQTGCTITR 236


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 524 LTXYFNFXTINEKQKFIFTVHILNYH 601
           L  YFN          + T+ ILNYH
Sbjct: 294 LGTYFNCIMFMVASSVVSTILILNYH 319


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 524 LTXYFNFXTINEKQKFIFTVHILNYH 601
           L  YFN          + TV +LN+H
Sbjct: 325 LGSYFNCIMFMVASSVVLTVLVLNFH 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,201
Number of Sequences: 438
Number of extensions: 3028
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)