Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a20f
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    30   1.9  
04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268     29   2.4  
04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959     29   2.4  
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232...    29   3.2  
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731...    29   3.2  
01_06_1259 - 35810926-35811777                                         29   3.2  
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427...    29   4.3  
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733...    28   5.6  
09_04_0600 + 18883094-18883393,18883606-18883755,18883851-188841...    28   7.5  
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624...    27   9.9  
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557...    27   9.9  
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    27   9.9  
06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37...    27   9.9  

>01_05_0078 +
           17931998-17932062,17933320-17933416,17933506-17933601,
           17933957-17933988,17935143-17935595,17935831-17935975,
           17936058-17936159,17937798-17937890,17939448-17939489,
           17940092-17940202,17940446-17940517,17940596-17940714,
           17940981-17941044,17941133-17942782
          Length = 1046

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +2

Query: 14  RPAINSHGNSGIACCKQVLAKYLHYKLFSELCLTTVQQLLKRKD-AVDQKPMEHNLSRKN 190
           RP     G   +   +   +  L  K  +E     + Q  K K+ ++D+    HN SRK 
Sbjct: 638 RPVKTQAGYGQVKAKEYHRSDSLPVKKQAETNYQQISQSGKEKEHSMDESNSTHNRSRKR 697

Query: 191 LKNEVGLQLPPEQKI 235
             ++V   LPPE+++
Sbjct: 698 TPDQVDGSLPPEKQV 712


>04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268
          Length = 667

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 20  AINSHGNSGIACCKQVLAKYL-HYKLFSELCLTT 118
           +IN  G SGI CC+  + K + HYK++ +    T
Sbjct: 69  SINGEGCSGIGCCQTAIPKGIKHYKVWFDTHFNT 102


>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
          Length = 849

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 526 KVYFHSTHTELSQRTITLRFLDPQVFIGLQILHLLHP 416
           +VYF++   +L+  T+    L   VFIGL +L L  P
Sbjct: 14  RVYFYAFDIDLASSTLVTGMLSVHVFIGLLLLSLHAP 50


>04_04_1441 -
           33621423-33622118,33622251-33622315,33623140-33623227,
           33623957-33625570
          Length = 820

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/52 (26%), Positives = 32/52 (61%)
 Frame = +2

Query: 197 NEVGLQLPPEQKILLSLLMMNKHQ*LNEVEADQKVPRKKRESRARVKVEVVD 352
           +EV ++   ++K   + L+  + +   + + ++KV ++K+E + + KVEVVD
Sbjct: 321 DEVKVEKKKKKKAKKASLVEGETEGAKDSKQEKKVKKEKKEKKKKKKVEVVD 372


>03_02_0917 +
           12372122-12372422,12372487-12372524,12373103-12373186,
           12373796-12374504,12374641-12374729,12374834-12374903,
           12374977-12375060,12375097-12375239,12375337-12375418,
           12375605-12375687,12375769-12375835,12376287-12376376,
           12377631-12377737,12377862-12377969
          Length = 684

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 281 PRLATGACSSSEDLAESFVLVAAGGRPRFL 192
           P+    AC S ED   SF    +GGRP+F+
Sbjct: 66  PKSNQKACKSFEDFDISFKSTRSGGRPKFV 95


>01_06_1259 - 35810926-35811777
          Length = 283

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = +1

Query: 115 DGSTVVEKKGRGR------PKANGTQPESKELKKRGRPPAATRTKDSAKSSD 252
           + S+   K+GR R      P+ + T P + + K+RGRPP       +A+S++
Sbjct: 189 NASSQPRKRGRPRKDATMYPRKDATIPANTQPKRRGRPPKNRNLSGNAQSAE 240


>04_04_0923 +
           29441740-29441980,29442321-29442401,29442630-29442719,
           29443123-29443203,29443721-29443774,29444062-29444111,
           29444542-29444623,29444734-29444838,29445514-29445641,
           29445726-29445797,29445887-29445937,29446029-29446100,
           29446201-29446278,29446446-29447270,29447648-29448556
          Length = 972

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 112 DDGSTVVEKKGRGRP--KANGTQPESKELKKRGRPPAATRTKDSAKSSDD 255
           D GS   E  G+     K  GT+ +SKEL+K+    +   TKD +K + D
Sbjct: 33  DQGSEKKEMSGKNIKSIKETGTKGQSKELQKK-ESKSRKSTKDKSKKNKD 81


>07_03_1632 +
           28271559-28271645,28272641-28272713,28273030-28273361,
           28273455-28274791,28275451-28275848,28275963-28277644,
           28277727-28277884,28278645-28278802,28279110-28279270,
           28279826-28280014
          Length = 1524

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 134 KRKDAVDQKPME-HNLSRKNLKNEVGLQLPPEQKILLSLL 250
           K+K AVD K  +  N     +KNE+ ++ P  QKI+L  L
Sbjct: 224 KKKKAVDTKRSKSRNDVSAVMKNEIDIETPAGQKIVLEAL 263


>09_04_0600 +
           18883094-18883393,18883606-18883755,18883851-18884142,
           18884697-18884858,18884958-18885021,18887573-18888080
          Length = 491

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 533 SLMVSKLKYLVNSHVSGNLLNYRDSTTFSIEIISPS 640
           S M   L+  V  H S  +L Y D+TT+ + + +PS
Sbjct: 450 SRMRLALQLCVRRHTSWCMLLYSDTTTYGLNVTAPS 485


>07_03_1219 +
           24960043-24960133,24960304-24960336,24962258-24962486,
           24963183-24963309,24963530-24963869,24964806-24965095
          Length = 369

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +1

Query: 139 KGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQ 261
           K +   K   ++P +K+ K + +PP     ++     DDE+
Sbjct: 153 KSKSSNKTKSSEPRAKQPKPQPQPPVKNEGREEEGGPDDEE 193


>07_01_0733 +
           5570084-5570282,5570395-5570600,5572484-5572624,
           5572773-5572949,5573049-5573145,5573575-5573687,
           5573774-5573896,5574004-5574075,5575340-5575432,
           5575564-5575674,5575767-5575889,5576834-5576890,
           5576939-5577022,5577140-5577214,5577418-5577554,
           5577719-5577853,5579029-5579168,5579334-5579399,
           5579732-5579838,5579910-5579990,5580064-5580138,
           5580224-5580325,5581837-5582005,5582090-5582217,
           5582596-5582679,5582779-5582879,5583729-5583882,
           5583964-5584038,5584112-5584262,5584463-5585078,
           5585427-5585487,5585874-5586019,5586104-5586287,
           5586363-5586440,5586603-5586931,5587023-5587199,
           5587571-5587667,5587742-5587897,5587962-5588198,
           5588271-5588354,5588426-5588486,5588762-5588898
          Length = 1912

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 136 KKGRGRPKANGTQPESKELKKRGR 207
           KKG+G  K +  +P+SK+ KK  R
Sbjct: 8   KKGKGSGKPDQLRPKSKQFKKHSR 31


>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 163 NGTQ-PESKELKKRGRPPAATRTKDSAKSSDDEQAP 267
           NGT  P S + +KRGR P       +A SSD    P
Sbjct: 42  NGTHDPASGQKRKRGRKPKPPAAAAAAASSDGHHHP 77


>06_01_0037 -
           369498-369568,369668-369760,369889-369991,370061-370156,
           370227-370293,370379-370446,370606-370681,370890-370975,
           371065-371150,371337-371409,371490-371735,371845-371937,
           372045-372119,372496-372540,372631-372708,372805-372921,
           373865-373894
          Length = 500

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 151 RPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDE-QAPVA 273
           +P++  T+P+ ++ + +   P AT+T++S  S D    +P+A
Sbjct: 179 KPQSEPTEPKKEKEQPKAPEPKATKTEESFLSEDRTFSSPIA 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,507,323
Number of Sequences: 37544
Number of extensions: 266325
Number of successful extensions: 929
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)