Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a20f
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07680.1 68415.m00992 ABC transporter family protein                30   1.5  
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron...    29   2.7  
At1g77310.1 68414.m09004 wound-responsive protein, putative simi...    29   3.6  
At3g17890.1 68416.m02279 expressed protein                             28   6.2  

>At2g07680.1 68415.m00992 ABC transporter family protein 
          Length = 1194

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 372 WCIFAWPSTTSTFTLALDSRF-FLGTFWSASTSFSYWCLF 256
           WC+F W +T + F+L     F  +G    A+T F+   LF
Sbjct: 256 WCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALF 295


>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = +2

Query: 134 KRKDAVDQKPMEHNLSRKNLKNEVGLQLPPEQKILLSLLMMNKHQ*LNEVEADQKVPRKK 313
           K+K   ++KP E   S K  K +   +     ++       NK +  +E E   + P KK
Sbjct: 462 KKKKVEEEKPEEEEPSEKKKKKKAEAETEAVVEVAKEEKKKNKKKRKHEEEETTETPAKK 521

Query: 314 RESRARVK 337
           ++ + + K
Sbjct: 522 KDKKEKKK 529


>At1g77310.1 68414.m09004 wound-responsive protein, putative similar
           to wound-responsive protein 14.05 (GI:16506638)
           [Castanea sativa]
          Length = 699

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +1

Query: 103 TMSDDGSTVVEKKG-RGRPKANGTQPESKELKK---RGRPPAATRTKDSAKSS 249
           T S     + +K G  GRPK +  +   + L+K     RPPAAT  +D+  SS
Sbjct: 326 TESKTSIQISKKSGSNGRPKYSTLEKAIRNLEKLVAESRPPAATENQDADISS 378


>At3g17890.1 68416.m02279 expressed protein
          Length = 153

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 163 NGTQPESKELKKRGRPPAATRTKD---SAKSSDDEQAP 267
           NG+QPE+ + K   RP    +TK+   + KS + ++ P
Sbjct: 21  NGSQPEAPKTKAEKRPKRVQKTKEKDLNLKSDEPKRVP 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,722,554
Number of Sequences: 28952
Number of extensions: 214925
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)