Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a19r
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    30   1.4  
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33...    29   4.2  
07_03_1492 + 26960876-26960986,26961910-26962074,26962153-269622...    28   7.3  
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389...    27   9.7  
05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322...    27   9.7  
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921...    27   9.7  

>08_01_0114 -
           900530-901191,901269-901338,901536-901640,901721-901831,
           901912-902016,902245-902391,903273-903354,903445-903786,
           903873-904177,904259-904435,904799-904852,905171-905254,
           905855-905968,906048-906321,907552-907926,908003-908267,
           908352-908538,908615-909052,909895-909966,910037-910630,
           911471-911623,911700-911828,912326-912657,912705-912840,
           913046-913491,913580-915087,915169-915431,915622-915738,
           915844-916014,916743-916845,916930-916988,918360-918461,
           918560-918649,918727-918877,919745-919830,919926-920102,
           920915-920978,921859-922008,923132-923211,923311-923376,
           924540-924747,925502-925575,925761-925848,926140-926312,
           926541-926609,926698-926741,927074-927167,927290-927366,
           927475-927552,927992-928085
          Length = 3314

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 366 KKNTLPGSATRILICESSMIL*LIISYNL*HRYTLISS 253
           K N  P + TR+++ E S I   +  YNL H Y L SS
Sbjct: 611 KSNHSPEALTRVVVQEFSAIYEPVFIYNLMHIYDLFSS 648


>07_01_0042 -
           334417-334431,334563-334688,334852-335136,335220-335368,
           336239-336536,337030-337131,337245-337613,337973-338115,
           338334-338518,339246-339475,339734-339821,340158-340253,
           340397-340512,340604-340852,340950-341175,341411-341622
          Length = 962

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 200 LGLYYTSILVFFLLIKKPLLISVYLCYKLYDIINY 304
           L +YYTS+ ++F +   P++  ++  Y LY  IN+
Sbjct: 843 LMMYYTSVFIYFWIFSTPVVSLIFGSY-LYICINW 876


>07_03_1492 +
           26960876-26960986,26961910-26962074,26962153-26962271,
           26962559-26962633,26963063-26963156,26963239-26963298,
           26963474-26963539,26963622-26963720,26964027-26964035
          Length = 265

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 452 VKYRAILPYVQITKR*LFNVFFFYLRRNVSNATSKSLSIFKDILRLLNLHTLVIICKQY 628
           +KY  +  Y+  +    F +FF Y+  +  +  S +L+ FKD+L          +C  Y
Sbjct: 150 IKYPTLAKYILESSS--FELFFQYVELSNFDIASDALNTFKDLLTKHEAAVSEFLCSHY 206


>06_03_0157 +
           17337641-17337896,17337975-17338082,17338643-17338908,
           17339933-17340021,17340095-17340198,17340403-17340508,
           17340600-17340675,17340772-17340883,17341719-17342250,
           17343097-17343131,17343924-17343984,17344054-17344132,
           17344266-17344349
          Length = 635

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
 Frame = -3

Query: 582 KISLKMLK--LLEVAFETFRLK*KKKT---LNS*RFVI*TYGKIALYFTYNVCMFSYH*I 418
           K +L ML+  L+ + FE F L  KKK    +N  +++    G  +L   +  C      +
Sbjct: 543 KEALTMLRPILVAMVFEYFGLGWKKKQHVYMNELKYL---RGLFSLNI-FMFCGIRASAV 598

Query: 417 SQRQILEKSRLKILPLEKKNTLPGSATRILI 325
           S +Q L +SR+ +LP  K    PG  +  L+
Sbjct: 599 SYKQFLVRSRILMLPSSKDAVSPGQLSFTLV 629


>05_01_0003 +
           29476-29847,30192-31519,31612-31722,31836-32112,
           32233-33714
          Length = 1189

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 278 YKLYDIINYNIIELSQINILVADPGNVFFFSKGK---IFNRDFSSIC 409
           YKL  ++ +N        I+  + G +F FSKG    +F R  SS C
Sbjct: 569 YKLLHVLEFNSARKRMSVIVRNEEGKIFLFSKGADSVMFERLSSSDC 615


>02_05_1142 - 34391144-34391590,34391715-34391904,34392058-34392128,
            34392403-34392515,34392656-34392749,34392843-34392908,
            34393120-34393282,34393441-34393547,34393918-34394115,
            34394204-34394329,34394800-34394904,34395056-34395098,
            34395334-34395391,34395479-34395659,34395751-34395917,
            34396010-34396249,34396341-34396781,34397147-34397272,
            34397457-34397561,34397935-34398002,34398169-34398272,
            34398856-34399008,34399472-34399570,34399919-34400046,
            34400149-34400300,34400423-34400502
          Length = 1274

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
 Frame = +2

Query: 281  KLYDIINYNI----IELSQINILVADP--GNVFFFSKGKIFNRDFSSICL 412
            +L D++N  +    ++L +  +L ADP  GN+ +  +G++   DF  +C+
Sbjct: 854  RLLDLVNKGVEASLVQLLETGLLHADPHPGNLRYTPEGRVGFLDFGLLCM 903


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,823,921
Number of Sequences: 37544
Number of extensions: 246858
Number of successful extensions: 385
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)