Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a19r
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55578| Best HMM Match : 7tm_1 (HMM E-Value=0)                       32   0.46 
SB_59382| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_55578| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 333

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 212 YTSILVFFLLIKKPLLISVYLCYK-LYDIINYNIIELSQINILVA 343
           + +IL+FF L    ++IS +  ++ L  I NY ++ LS  +ILVA
Sbjct: 30  FVAILMFFTLFGNIIVISCFYTFQDLRTICNYFVVSLSVADILVA 74


>SB_59382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +2

Query: 464 AILPYVQITKR*LFNVFFFYLRRNVSNATSKSLSIFKDILRLLNLHTLVIIC 619
           A+  Y+++TK  L  +FF     N++    ++L+  K+I++  +  T  +IC
Sbjct: 175 ALETYLELTKSELAYLFFEAQSDNITTGERQALNDLKNIIKKADKGTTTVIC 226


>SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -2

Query: 436  VFISLN*SKANTREIPIKDFTFRKKKYITRVS-DQNI-DLRKFNDII 302
            VFI+L  S+ NT +I + D + +KKK   R S DQ + +L    D+I
Sbjct: 1491 VFIALYGSEGNTEDIVLADTSKKKKKTFDRGSIDQFVKELEDVGDVI 1537


>SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 127 NQKIYTISRYYYLFPALFVCLGLFRQSYLKCTIN*FTMC 11
           N  I T+   Y  FP  F C  +   + +KC    FT+C
Sbjct: 802 NPYILTVVDEYSRFPFAFPCPNMHSSTVIKCLEQIFTLC 840


>SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +2

Query: 206 LYYTSILV--FFLLIKKPLLISVYLCYKLYDIINYNIIELSQI 328
           L +T ++V    LL+K  L+  V+ CYK   ++NY I + +QI
Sbjct: 102 LMFTVVMVCLIVLLVKAYLIACVWSCYK--TLVNYRINQATQI 142


>SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 191 FMCLGLYYT---SILVFFLLIKKPLLISVYLCYKLYDIINYNIIELSQINILVADPGN 355
           F    +YY     +LVFF+LI   + +++   Y L +  +Y  ++L  + + ++ PGN
Sbjct: 424 FWAYKIYYVFGFMLLVFFILITVTICVTIVCTYFLLNAEDYRCLQLIVLYVELS-PGN 480


>SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 490  CNLNIWQDCPIFYI*CLYVFISLN*SKANTREIPIKDFTFRKKKYITRVSDQN 332
            C L  W+D  +F +   Y F++   S      IP +  + R+  Y T   DQ+
Sbjct: 975  CRLTGWEDSLLFVLYLYYCFLTFQSSSCGRAHIPTQ--SVRESSYNTCTLDQS 1025


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,281,906
Number of Sequences: 59808
Number of extensions: 328830
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)