Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a19r
         (644 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    29   0.13 
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    26   1.2  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    26   1.2  

>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
 Frame = +2

Query: 128 PYIDSYW*IQIV-K*ILSTRNLFM-CLGLYYTSILVFFLLI----KKPLLISVYLCYKLY 289
           PY D ++ I +  K +  T NL + C+G+ Y S+LVF+L      K  L IS+ L   ++
Sbjct: 238 PYPDIFFNITLRRKTLFYTVNLIIPCVGISYLSVLVFYLPADSGEKIALCISILLSQTMF 297

Query: 290 DIINYNII 313
            ++   II
Sbjct: 298 FLLISEII 305


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
 Frame = +2

Query: 128 PYIDSYW*IQIV-K*ILSTRNLFM-CLGLYYTSILVFFLLI----KKPLLISVYLCYKLY 289
           PY+D  + I +  K +  T NL + C+G+ + +ILVF+L      K  L IS+ L   ++
Sbjct: 225 PYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVF 284

Query: 290 DIINYNII 313
            ++   II
Sbjct: 285 FLLLAEII 292


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
 Frame = +2

Query: 128 PYIDSYW*IQIV-K*ILSTRNLFM-CLGLYYTSILVFFLLI----KKPLLISVYLCYKLY 289
           PY D  + I +  K +  T NL + C+G+ + S+LVF+L      K  L IS+ L   ++
Sbjct: 225 PYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKISLCISILLSLTVF 284

Query: 290 DIINYNIIELSQINI 334
            ++   II  + + +
Sbjct: 285 FLLLAEIIPPTSLTV 299


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,715
Number of Sequences: 2352
Number of extensions: 11629
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63559560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)