Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a19r
(644 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical p... 31 0.53
Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical pr... 31 0.53
AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase... 31 0.53
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 29 2.8
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 29 2.8
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 29 2.8
Z83218-4|CAB05690.2| 706|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z81538-4|CAB04386.1| 174|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z74041-7|CAA98518.2| 335|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical
protein F31B12.1a protein.
Length = 1898
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +1
Query: 40 SNNFAEIIPNKRI---VLETNNNIWI*YKSFDSIHRFILVNSNSQVDIKYKKPFYVFRPI 210
SN+ PN R VL N N+W + S+ RF+L N V +K F+ I
Sbjct: 1814 SNDLTPKYPNNRTTSRVLGQNENVWKAQSRWKSMGRFVLENRKDTVHATLEKEFHEMAKI 1873
Query: 211 L 213
+
Sbjct: 1874 I 1874
>Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical protein
F31B12.1a protein.
Length = 1898
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +1
Query: 40 SNNFAEIIPNKRI---VLETNNNIWI*YKSFDSIHRFILVNSNSQVDIKYKKPFYVFRPI 210
SN+ PN R VL N N+W + S+ RF+L N V +K F+ I
Sbjct: 1814 SNDLTPKYPNNRTTSRVLGQNENVWKAQSRWKSMGRFVLENRKDTVHATLEKEFHEMAKI 1873
Query: 211 L 213
+
Sbjct: 1874 I 1874
>AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase C
PLC210 protein.
Length = 1898
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +1
Query: 40 SNNFAEIIPNKRI---VLETNNNIWI*YKSFDSIHRFILVNSNSQVDIKYKKPFYVFRPI 210
SN+ PN R VL N N+W + S+ RF+L N V +K F+ I
Sbjct: 1814 SNDLTPKYPNNRTTSRVLGQNENVWKAQSRWKSMGRFVLENRKDTVHATLEKEFHEMAKI 1873
Query: 211 L 213
+
Sbjct: 1874 I 1874
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +2
Query: 131 YIDSYW*IQIV-K*ILSTRNL-FMCLGLYYTSILVFFLLI----KKPLLISVYLCYKLYD 292
YID + +Q+ K + T NL F C+G+ + +ILVF+L K L IS+ + ++
Sbjct: 244 YIDVTYYLQLRRKPLFYTVNLVFPCVGISFLTILVFYLPSDSGEKVTLCISILVALTIFF 303
Query: 293 IINYNIIELSQINI 334
++ II + I +
Sbjct: 304 LLLTEIIPATSITL 317
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +2
Query: 131 YIDSYW*IQIV-K*ILSTRNL-FMCLGLYYTSILVFFLLI----KKPLLISVYLCYKLYD 292
YID + +Q+ K + T NL F C+G+ + +ILVF+L K L IS+ + ++
Sbjct: 244 YIDVTYYLQLRRKPLFYTVNLVFPCVGISFLTILVFYLPSDSGEKVTLCISILVALTIFF 303
Query: 293 IINYNIIELSQINI 334
++ II + I +
Sbjct: 304 LLLTEIIPATSITL 317
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +2
Query: 131 YIDSYW*IQIV-K*ILSTRNL-FMCLGLYYTSILVFFLLI----KKPLLISVYLCYKLYD 292
YID + +Q+ K + T NL F C+G+ + +ILVF+L K L IS+ + ++
Sbjct: 244 YIDVTYYLQLRRKPLFYTVNLVFPCVGISFLTILVFYLPSDSGEKVTLCISILVALTIFF 303
Query: 293 IINYNIIELSQINI 334
++ II + I +
Sbjct: 304 LLLTEIIPATSITL 317
>Z83218-4|CAB05690.2| 706|Caenorhabditis elegans Hypothetical
protein C31A11.7 protein.
Length = 706
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +2
Query: 200 LGLYYTSILVFFLLIKKPL--LISVYLCYKLYDI 295
+GLYY++I+ L+ + L++VY+ Y +YD+
Sbjct: 444 VGLYYSAIIGSSLIAVGMIGSLVTVYILYSIYDL 477
>Z81538-4|CAB04386.1| 174|Caenorhabditis elegans Hypothetical
protein F45H10.4 protein.
Length = 174
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 327 SIFWSLTLVMYFFFLKVKSLIGISLVFAF 413
SI W++ ++Y F L V S+I + L F+F
Sbjct: 82 SIAWNVVELVYSFILAVLSVISVWLSFSF 110
>Z74041-7|CAA98518.2| 335|Caenorhabditis elegans Hypothetical
protein T03F7.4 protein.
Length = 335
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = -3
Query: 270 YTLISSGFFINKKNTSIEV*YRPKHIKRFLVLNIYLTI*IHQYESMYGIKRFIL 109
+ ++ S F++ K TS+ V R K +KR L++ + + I + + F+L
Sbjct: 215 FFILHSSFYLCKSTTSLAVSERTKKLKRKYFLSVCIQVIIPIVIMAFPVSYFVL 268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,608,073
Number of Sequences: 27780
Number of extensions: 278663
Number of successful extensions: 693
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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