Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a19r
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.36 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.47 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.83 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.7  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
 Frame = +2

Query: 128 PYIDSYW*IQIV-K*ILSTRNLFM-CLGLYYTSILVFFLLI----KKPLLISVYLCYKLY 289
           PY D  + I +  K +  T NL + C+G+ + S+LVF+L      K  L IS+ L   ++
Sbjct: 222 PYPDIVFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLSISILLSLTVF 281

Query: 290 DIINYNIIELSQINI 334
            ++   II  + + +
Sbjct: 282 FLLLAEIIPPTSLTV 296


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
 Frame = +2

Query: 128 PYIDSYW*IQIV-K*ILSTRNLFM-CLGLYYTSILVFFLLI----KKPLLISVYLCYKLY 289
           PY+D  + I +  K +  T NL + C+G+ + ++LVF+L      K  L IS+ L   ++
Sbjct: 226 PYLDITFNITMRRKTLFYTVNLIIPCMGISFLTVLVFYLPSDSGEKVSLSISILLSLTVF 285

Query: 290 DIINYNII 313
            ++   II
Sbjct: 286 FLLLAEII 293


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 308 IIELSQINILVADPGNVFFFSKGKIFNRDFSSICL*LI 421
           ++ LS++   V+    V+F +   +F R F+ IC+ L+
Sbjct: 219 LLRLSRLVRYVSQWEEVYFLNMASVFMRIFNLICMMLL 256



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 623 VCKLLLVYANLII 585
           +C LLL+ ANLII
Sbjct: 93  LCMLLLLVANLII 105


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +2

Query: 128 PYIDSYW*IQIV-K*ILSTRNLFM-CLGLYYTSILVFFL 238
           PY D  + I +  K +  T NL + C+G+ + ++LVF+L
Sbjct: 235 PYSDITFNITMRRKTLFYTVNLIIPCVGITFLTVLVFYL 273


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 623 VCKLLLVYANLII 585
           +C LLL+ ANLII
Sbjct: 93  LCMLLLLVANLII 105


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 623 VCKLLLVYANLII 585
           +C LLL+ ANLII
Sbjct: 93  LCMLLLLVANLII 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,800
Number of Sequences: 438
Number of extensions: 3989
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)