Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a19r
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41140.1 68415.m05081 calcium-dependent protein kinase, putat...    29   3.5  
At1g35150.1 68414.m04359 hypothetical protein                          28   4.6  
At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3, ubiqu...    28   6.1  

>At2g41140.1 68415.m05081 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase CaMK3 [Nicotiana tabacum]
           gi|16904226|gb|AAL30820
          Length = 576

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = -1

Query: 161 LFEFTNMNLCMESKDLYYIQILLFVSSTIRLFGIISAKLFEMHYKLIYHVFE 6
           +F+F +M  C++ K L + +   F +S + ++ + + + +E H +  Y +FE
Sbjct: 469 VFDFVHMISCLQYKKLDFEE---FCASALSVYQLEAMETWEQHARRAYELFE 517


>At1g35150.1 68414.m04359 hypothetical protein
          Length = 459

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 385 KDFTFRKKKYITRVS---DQNIDLRKFNDIIINYIV*FITQ 272
           K  T R+KK+   VS   D+N+DL    D  INY    I Q
Sbjct: 386 KKRTIRRKKHFDEVSEKGDENMDLSPEEDFRINYFFTLIDQ 426


>At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3, ubiquitin
            ligase; contains similarity to Apc1/Tsg24 protein, the
            largest subunit of human anaphase-promoting complex
            (APC/C) GI:11967711 from [Homo sapiens]
          Length = 1678

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 290  DIIN-YNIIELSQINILVADPGNVFFFSKGKIFNRDFSSICL*LI 421
            D++N Y +  L++I  L A PGN F     K  +R    +CL LI
Sbjct: 1275 DLLNSYALYLLNEIKPLSATPGNAFPRGISKFVDRGTLEMCLYLI 1319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,338,491
Number of Sequences: 28952
Number of extensions: 238064
Number of successful extensions: 472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)