Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a19f
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 27 2.4
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 3.2
SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p... 27 3.2
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 4.2
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 4.2
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 26 4.2
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 25 7.4
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 25 7.4
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 9.7
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 9.7
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -2
Query: 188 PRSLPNLGWNLNIALVVKCSRVSSRICTDYISSEIQNYYESNFLKKLT 45
P SL L W++ A V RVS I + +SS++ + + +N LK L+
Sbjct: 752 PDSLSGLYWSVKSAGVRASRRVSRNIEGESVSSDLDDIF-ANVLKGLS 798
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 511 MALTLIMIYGAARGKPAYLLPFFCLQIFDFAITILTATGYL 633
+ L+L+ IY AA P Y+ ++F+F++ ++ ++ L
Sbjct: 499 LTLSLMSIYVAAEENPLYVASSIFSKLFNFSLDLIKSSSKL 539
>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = -3
Query: 337 THGPVHPAIEDHAQSLLKLLVPLGAGTGAMIPG*LCQSEHVGRSSIATHCHVHFPTWD 164
TH VHPA ++HA + +L T IP E ++A + P W+
Sbjct: 70 THPSVHPANDEHAAFQISVLERHPFTTQTFIPMCRSSDEQAYLIAVAPNAPDGMPDWN 127
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 482 MWVRWLQWVPWLSH 523
+WV LQW W+SH
Sbjct: 423 VWVNSLQWKTWISH 436
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 334 HGPVHPAIEDHAQSLLKLLV 275
H P HP +ED AQ L KL V
Sbjct: 122 HDPDHPTLEDVAQMLGKLKV 141
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 292 AIVRDPRLLDELDRESSPVSSWSNVG 369
A V D DELD+ SSP SS S+ G
Sbjct: 679 ATVEDDSPFDELDKFSSPFSSSSSRG 704
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -3
Query: 352 NSLGMTHGPVHPAIEDHAQSLLKLLVPLGAGTGAMIPG*LCQSEHVGRSSIATHCHV 182
N+ +T+ P HP K+LV + C + H+ R A+HCH+
Sbjct: 146 NAYSLTYNPAHPWSVIPEDR--KVLVGSTRSDSVFVNTVYCHTCHLYRPPRASHCHL 200
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +1
Query: 328 DRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHD 477
+R SP W+ + LP P +N P A+ P S +Y D
Sbjct: 38 ERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRD 87
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 331 RESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHP 450
R SP+S S+ VLP S + +P Y+ +++P
Sbjct: 109 RNQSPISRKSSCVTCSTVLPLEFSVPDVQPRLYTNSSTNP 148
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 227 VRTCRQKQHSHSLPRSLPNLGWNLNIALVVK 135
V C++K H +LP L N + L+ LV++
Sbjct: 548 VIVCKRKNHKENLPAQLANGIYRLDDTLVLE 578
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,727
Number of Sequences: 5004
Number of extensions: 62764
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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