Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a19f
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   5e-06
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)               29   2.6  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   28   5.9  
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)                28   7.8  
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = +1

Query: 202 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDE 324
           CC C+ VR GTI+LG  HLF+H+  + VLA ++  P + +E
Sbjct: 20  CCCCMDVRIGTIVLGFCHLFIHIAGVVVLAQMLLHPEVYEE 60


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 208 FCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDE 324
           FCL +      LG++HLF  L+ + V  A++ D   +DE
Sbjct: 494 FCLKIFGTGKKLGTYHLFSSLIIMSVFVAVIVDNLEIDE 532


>SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1252

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -3

Query: 388 AVHLQCAPHCSMNSLGMTHGPVHPAIEDHAQSLLKLLVPLGA 263
           +VHLQ  P    N +   H  V P I  HAQ  L+L VP G+
Sbjct: 299 SVHLQWKPPFKPNGVIGYHVDVWPTINGHAQQ-LRLSVPHGS 339


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 213 PTCSDWHNYPGIMAPVPAP 269
           P C DW  Y GI AP  AP
Sbjct: 14  PACYDWCCYGGISAPTQAP 32


>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
          Length = 607

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 388 PTPLSNVETRPSPYSQHASHPSDHS 462
           P P S V T+P P+S   + P  HS
Sbjct: 100 PQPHSAVHTKPQPHSAATTQPQPHS 124


>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1271

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 334 ESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSD 456
           +S+PV   S V     + P   +  +T+P+P  Q AS  SD
Sbjct: 474 QSNPVPEVSQVAPKASLAPKANALPQTKPTPQDQDASGDSD 514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,371,406
Number of Sequences: 59808
Number of extensions: 491549
Number of successful extensions: 1556
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)