Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a19f
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23590.1 68416.m02967 expressed protein                             38   0.006
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta...    30   1.6  
At1g09350.1 68414.m01046 galactinol synthase, putative contains ...    29   3.6  
At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to...    28   6.4  
At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to...    28   6.4  
At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA synt...    28   6.4  
At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA synt...    28   6.4  
At1g60800.1 68414.m06844 leucine-rich repeat family protein / pr...    28   6.4  
At1g27090.1 68414.m03302 glycine-rich protein                          28   6.4  
At4g32630.1 68417.m04645 hypothetical protein                          27   8.4  
At1g54570.1 68414.m06223 esterase/lipase/thioesterase family pro...    27   8.4  
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea...    27   8.4  
At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to...    27   8.4  
At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to...    27   8.4  

>At3g23590.1 68416.m02967 expressed protein 
          Length = 1309

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = -3

Query: 418  DEFPHLTVVWAVHLQCAPHCSMNSLGMTHG-PVHPAIEDHAQSLLKLLVPLGAGTGAMIP 242
            D FP L V +  H +C    +    G+THG PVH  +E    +LL +      G+  + P
Sbjct: 761  DSFPKLKVWYRQHQRCI---AATLSGLTHGSPVHQTVE----ALLNMTFGKVRGSQTLNP 813

Query: 241  G*LCQSEHVGRSSIATHCHVHFPTWDGILTLPWL*NA 131
                 S   G +S  ++    FP WD +  +P++ +A
Sbjct: 814  VNSGTSSSSGAASEDSNIRPEFPAWDILKAVPYVVDA 850


>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
            contains Pfam domain PF01851: Proteasome/cyclosome repeat
          Length = 1103

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = +1

Query: 211  CLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVL- 387
            CL +++  IILG +H  L+ + L +       PR++  +D+   P+S    VG+  DV+ 
Sbjct: 888  CLDMKS--IILGKYHYVLYFLVLAM------QPRMMLTVDQSLKPISVPVRVGQAVDVVG 939

Query: 388  ----PTPLSNVETRPSP 426
                P  ++  +T  +P
Sbjct: 940  QAGRPKTITGFQTHSTP 956


>At1g09350.1 68414.m01046 galactinol synthase, putative contains
           Pfam profile: PF01501 glycosyl transferase family 8
          Length = 334

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 218 CRQKQHSHSLPRSLPNLGWNLNIALVVKCSRVSS 117
           C QK+  H  P++LP    +L+ A V++C++  S
Sbjct: 299 CGQKEDVHRKPKTLPQFFTDLSEADVLQCAKAPS 332


>At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 305

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 118 ELTLEHFTTKAMLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 261
           EL+  H   +A    +   G ++  +WL   CL++  GT++L  W LF
Sbjct: 97  ELSNPHSHPQARHNNNNNNGHDQTKKWLLG-CLYLVIGTVLLSLWMLF 143


>At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 118 ELTLEHFTTKAMLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 261
           EL+  H   +A    +   G ++  +WL   CL++  GT++L  W LF
Sbjct: 157 ELSNPHSHPQARHNNNNNNGHDQTKKWLLG-CLYLVIGTVLLSLWMLF 203


>At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to fatty acid elongase
           3-ketoacyl-CoA synthase 1 GB:AAC99312 [Arabidopsis
           thaliana]
          Length = 459

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 469 YHDADVGAMVTVGTMALTLIMI-YGAARGKPAYLLPFFCLQIFD 597
           +HD      V +G + +++    Y   R KP YL+ F C Q  D
Sbjct: 29  HHDFFSPFPVKIGLLLISIFFYAYSTTRSKPVYLVDFSCHQPTD 72


>At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to GI:4091810; contains Pfam
           profile PF02797: Chalcone and stilbene synthases,
           C-terminal domain
          Length = 466

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 469 YHDADVGAMVTVGTMALTLIMI-YGAARGKPAYLLPFFCLQIFD 597
           +HD      V +G + +++    Y   R KP YL+ F C Q  D
Sbjct: 29  HHDFFSPFPVKIGLLLISIFFYAYSTTRSKPVYLVDFSCHQPTD 72


>At1g60800.1 68414.m06844 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 632

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 536 TAPLVGNRLICCPSSVFRSSTLPSP 610
           T  ++GN LIC P +V   S +P P
Sbjct: 193 TFKVIGNALICGPKAVSNCSAVPEP 217


>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 378 RCTAHTTVKCGNSSQPILSTCFTS 449
           RC  H  +   NS QPI S C TS
Sbjct: 200 RCVEHAKLWLANSEQPIESNCNTS 223


>At4g32630.1 68417.m04645 hypothetical protein 
          Length = 531

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 337 SSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSL 465
           +SP ++ ++ G +G V+P    N+ T+ +    +   PSD S+
Sbjct: 361 TSPTTAHAHSGSSGPVVPVAPDNLNTKETATLANNQGPSDFSM 403


>At1g54570.1 68414.m06223 esterase/lipase/thioesterase family
           protein contains Interpro entry IPR000379
          Length = 704

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 406 HLTVVWAVHLQCAPHCSMNSLGMTHG-PVHPAIEDHAQSLLKLLVPLGAGTGAMIP 242
           H TV +A+         M +LG+ +  P    IE   Q L K ++PL +  G +IP
Sbjct: 245 HFTVPYALSFIMGDPIKMATLGIDNQLPTGVKIEKLRQRLTKTMLPLLSELGGIIP 300


>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to cell cycle control protein cwf8 (SP:O14011)
           [Schizosaccharomyces pombe (Fission yeast)]
          Length = 523

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +1

Query: 310 RLLDELDRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADVG 489
           ++L  L   S  V+S   VG T D++ T  S+   R    S+  ++ S H+L  H A+V 
Sbjct: 255 QILSTLTGHSKKVTSIKFVGDT-DLVLTASSDKTVRIWGCSEDGNYTSRHTLKDHSAEVR 313

Query: 490 AMVTVGT 510
           A+    T
Sbjct: 314 AVTVHAT 320


>At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 318

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 163 HPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 261
           H     ++ + WL   CL++  GT++L  W LF
Sbjct: 131 HNNNDQDKANNWLLG-CLYLTIGTVLLSLWMLF 162


>At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 163 HPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 261
           H     ++ + WL   CL++  GT++L  W LF
Sbjct: 178 HNNNDQDKANNWLLG-CLYLTIGTVLLSLWMLF 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,560,330
Number of Sequences: 28952
Number of extensions: 343850
Number of successful extensions: 1052
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)