Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a18r
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   1.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.4  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   5.6  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   5.6  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   5.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   5.6  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = -2

Query: 628 DRPIR*NPVLGR-RLRGHLEGYGAARQRGSGQEHRSLQLQLEAAGEVAAARDCQAGRQSG 452
           ++P   +   GR R R HL  +      G  +  R+    + AAG+ AAAR       +G
Sbjct: 244 EKPFECDKCRGRFRRRHHLVHHKCG---GEEEAERAPAPAVRAAGDAAAARGAARADGAG 300

Query: 451 GMSSLPQPETPQGVL*GSRREDHSVLSPRLAG 356
           G     +P   Q      +R   +V  P+LAG
Sbjct: 301 GPLHDHRPALAQ------QRRVAAVQVPQLAG 326


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 196 DPTPRHGLRDHDVPAVDLVSDEDLGDSLPESVSDGL 303
           DP P  G+RDH++  +     ++LG S+ + VS  L
Sbjct: 115 DPEPFGGVRDHNLTTL----CQELGISVVQKVSHTL 146


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 333 DPQLMEDPKLKAIADRLGKTVAQVLI 256
           DP ++++ + KA AD+  K V  ++I
Sbjct: 628 DPSILKNLRQKAEADKNDKAVKDLVI 653


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 186 FDVLDFKLSREDVALIDSFDCGGR 115
           FD  D K   E+   I + DCG R
Sbjct: 60  FDASDPKFLTENCDYIHNVDCGDR 83


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 186 FDVLDFKLSREDVALIDSFDCGGR 115
           FD  D K   E+   I + DCG R
Sbjct: 60  FDASDPKFLTENCDYIHNVDCGDR 83


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 353 LSGEPRGEYAVIFTPRASQ 409
           L GE RG++ V  TP  S+
Sbjct: 212 LEGERRGKFTVPLTPVVSE 230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,260
Number of Sequences: 336
Number of extensions: 3182
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)