Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a18r
(701 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.) 235 3e-62
SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 118 3e-27
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 107 9e-24
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 2e-17
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 7e-10
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 8e-07
SB_56184| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_54491| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041) 31 0.90
SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0) 29 3.6
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 29 4.8
SB_59502| Best HMM Match : Arg_repressor (HMM E-Value=1.2) 28 6.4
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 28 6.4
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 28 6.4
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 28 6.4
SB_13990| Best HMM Match : Ribosomal_L19 (HMM E-Value=4.1e-15) 28 6.4
SB_12463| Best HMM Match : IPP-2 (HMM E-Value=1.2e-27) 28 6.4
SB_48670| Best HMM Match : AT_hook (HMM E-Value=3) 28 8.4
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 28 8.4
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 28 8.4
>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 235 bits (575), Expect = 3e-62
Identities = 107/190 (56%), Positives = 138/190 (72%)
Frame = -3
Query: 696 VQYLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSN 517
+ YLDLYLIHWP ++++ FP D+ G + ++ D DTWKAME LV EGLVK+IG+SN
Sbjct: 100 LDYLDLYLIHWPLSFRDGDEFFPKDEQGNVLYAYHDPCDTWKAMEKLVDEGLVKAIGLSN 159
Query: 516 FNSKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKP 337
FNSKQ++ + A +KPV NQVECHP LNQ +L + + ++ AYSPLGS DRPWAKP
Sbjct: 160 FNSKQVDDICAIARIKPVANQVECHPLLNQAKLIDHHKKHNIQTIAYSPLGSLDRPWAKP 219
Query: 336 DDPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDVLDFKLSR 157
DDP +M DP + A+ADR +TVAQ+ IR+QI G +VIPKSVT RI SNF V DF+LS
Sbjct: 220 DDPHVMRDPTMVAMADRYSRTVAQICIRFQIQRGVLVIPKSVTPERIKSNFQVFDFELSA 279
Query: 156 EDVALIDSFD 127
ED+A I+ +
Sbjct: 280 EDMATIEGLN 289
>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
Length = 333
Score = 118 bits (285), Expect = 3e-27
Identities = 61/153 (39%), Positives = 85/153 (55%)
Frame = -3
Query: 585 VDTWKAMEPLVKEGLVKSIGVSNFNSKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFC 406
V +W+AM L GL++SIGVSNFN + LE L Q V P VNQ+E HP+L K L ++C
Sbjct: 175 VGSWQAMIDLRSRGLIRSIGVSNFNIQHLEALRQQTGVVPAVNQIEVHPFLQMKELTQYC 234
Query: 405 EARGVKITAYSPLGSPDRPWAKPDDPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIV 226
+ + I A+SPL ++ + DP L +A + KT AQ+L+R+ + G
Sbjct: 235 KRHNITIQAFSPLTKGEK----------LCDPILSYVAKKYNKTTAQILVRWSLQKGYAC 284
Query: 225 IPKSVTRSRIASNFDVLDFKLSREDVALIDSFD 127
IPKS RI N V DF + D+ LID +
Sbjct: 285 IPKSAQLERIKENAKVFDFSIDMADMELIDGLE 317
>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
Length = 407
Score = 107 bits (257), Expect = 9e-24
Identities = 51/101 (50%), Positives = 72/101 (71%)
Frame = -3
Query: 696 VQYLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSN 517
+ YLDLYLIH P A+K+ L + G I ++ +TW+AME LV +GL K+IGVSN
Sbjct: 141 LDYLDLYLIHIPVAFKKGVRLPHSIAEGIIGYTPEGVQNTWQAMEGLVAKGLCKAIGVSN 200
Query: 516 FNSKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARG 394
F+ K+L +LL+ A++ P NQVE HPYL Q++LKEFC+++G
Sbjct: 201 FSVKRLNKLLETASIVPACNQVELHPYLPQEKLKEFCDSKG 241
Score = 80.6 bits (190), Expect = 1e-15
Identities = 40/100 (40%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
Frame = -3
Query: 423 RLKEFCEARGVKITAYSPLGSPDRPWAKPD---DPQLMEDPKLKAIADRLGKTVAQVLIR 253
+ K+FC+++G+ +TAYSPLG+P R K +P++ME+P +K IA + +VA+VL+R
Sbjct: 280 KCKDFCDSKGILLTAYSPLGNPGRLVPKERLEREPKVMEEPVIKEIAAKHNCSVARVLLR 339
Query: 252 YQIDSGNIVIPKSVTRSRIASNFDVLDFKLSREDVALIDS 133
+ I G V+PKS +R + NF L L+ +++A I S
Sbjct: 340 WGIQRGYPVLPKSTSRDHLHDNFSALGLVLTDDEMAAIKS 379
>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 86.6 bits (205), Expect = 2e-17
Identities = 53/187 (28%), Positives = 92/187 (49%)
Frame = -3
Query: 699 NVQYLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVS 520
+ Y+DL+LIH K T G+ + + + ++WKAME L ++G ++S+GVS
Sbjct: 421 STDYIDLFLIH----SKTCDDFLLTCAEGEPRGT---WKESWKAMEELHRQGKIRSLGVS 473
Query: 519 NFNSKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAK 340
NFN +L+ L+ ATV Q P+ ++ + FC G++ YS LG+ +
Sbjct: 474 NFNVDELQELVNFATVPVSAVQNWFDPFHQDRKARRFCNKHGIRYIGYSTLGTQWVYFHG 533
Query: 339 PDDPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDVLDFKLS 160
+++ I+ ++QV++R+ I VIP+S I NF LD L+
Sbjct: 534 LKTNPVLQSKVFSEISSHYEYVISQVVLRWAIHQNVTVIPRSRNSRNIYLNFRSLDLSLN 593
Query: 159 REDVALI 139
++ +I
Sbjct: 594 ENEIEMI 600
>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 61.3 bits (142), Expect = 7e-10
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = -3
Query: 585 VDTWKAMEPLVKEGLVKSIGVSNFNSKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFC 406
+ + A+ L +EGL++S+GVSNF LE L + P +NQ+E +P+ Q+ + ++C
Sbjct: 133 IAAYDALLTLKEEGLIRSVGVSNFGVHHLEELRKAGCRTPAINQIEINPFWRQEEIIKYC 192
Query: 405 EARGVKITAYSPL 367
G+ + Y+P+
Sbjct: 193 NKHGITVEGYAPV 205
>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2102
Score = 51.2 bits (117), Expect = 8e-07
Identities = 28/105 (26%), Positives = 54/105 (51%)
Frame = -3
Query: 441 PYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKPDDPQLMEDPKLKAIADRLGKTVAQV 262
P+ K +++C+ +K YS LG +P + + +L+ I TV+QV
Sbjct: 1328 PFYQDKATRQYCKENNIKYMGYSTLGGMYVREGFDKNP-VQNNFELQRIGGVFDATVSQV 1386
Query: 261 LIRYQIDSGNIVIPKSVTRSRIASNFDVLDFKLSREDVALIDSFD 127
++++ ++ +VIP+S T + I +NF + +L + +A DS D
Sbjct: 1387 VLKWALEQDVLVIPQSRTPNHIRTNFHLDHVQLDSKQMAYFDSLD 1431
>SB_56184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = -3
Query: 603 FSDVDYVDTWKAMEPLVKEGLVKSIGVSNFNSKQLERLLQHATVKPVVNQVE---CHPYL 433
+SD Y+D + L EG ++ I ++NF++ +++ + H +K NQ++
Sbjct: 32 YSDKRYLDALLHLSELQSEGKIQEISLTNFDTNRMQEITDHG-IKISSNQIQFSLIDRRA 90
Query: 432 NQKRLKEFCEARGVKITAYSPL 367
N+K +K FC G+ + AY +
Sbjct: 91 NEKMVK-FCLDHGISLLAYGTI 111
>SB_54491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -3
Query: 666 WPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSNFNSKQLERLL 487
W + E SLFP + Y TW++++P + + K I + SK ER+
Sbjct: 69 WSFDWDEGASLFPDFFPRSTTAKTLSYEVTWRSLDPAKEYSMAKDIFRDSILSKDTERIE 128
Query: 486 QHATVKPVV 460
+ K ++
Sbjct: 129 PDSEAKQII 137
>SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041)
Length = 754
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -1
Query: 668 TGPRPTRKTALSSRPTNQVKSSSRTSITWTPGRLWSRSSKRVWSRASESPTSTRSSWR 495
T PR R+T LS R + S+ S T + +++RV E+PTS+ +SW+
Sbjct: 208 TSPRQKRETLLSRRRSTGESSTQEDS---TGDDTSTSATERVRRAVLEAPTSSENSWK 262
>SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1702
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 566 WSRSSKRVWSRASESPTSTRSSWRGCCSTRLSSRSS 459
W +W R+ + T RS W G C T L ++ S
Sbjct: 1014 WDAIHSELWLRSQGTQTKRRSPWTGICRTFLQAKFS 1049
>SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -1
Query: 668 TGPRPTRKTALSSRPTNQVKSSSR--TSITWTPGRLWSRSSKRVWSRASESPTSTR 507
T +++++ + RPT++ + SR T WTPGR + +R + +PT R
Sbjct: 127 TAEDTSKESSKAKRPTSRPRPPSRLLTKRAWTPGRRTPFACRRAPTPGRRTPTPGR 182
>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2195
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 184 KVARDPTPRHGLRDHDVPAVDLVS 255
+ +P PRHG RD D PAV++++
Sbjct: 351 RTCTNPEPRHGGRDCDGPAVEILA 374
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/67 (34%), Positives = 33/67 (49%)
Frame = -1
Query: 659 RPTRKTALSSRPTNQVKSSSRTSITWTPGRLWSRSSKRVWSRASESPTSTRSSWRGCCST 480
R +T+LSSR ++ + SR G+ SRS +S S S + +R RG +
Sbjct: 637 RSRSRTSLSSRSRSRDRGGSRR------GKRRSRSRSSSYSSRSRSRSRSRDRGRGRKRS 690
Query: 479 RLSSRSS 459
R SRSS
Sbjct: 691 RRRSRSS 697
>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = -3
Query: 231 IVIPKSVTRSRIASNFDVLDFKLSREDVALIDSFDCGGRLVPMTASLGHKHHPFEN 64
+++ ++ T ++ +FD+ + L R ++ L+++ G R++ S GH F N
Sbjct: 1562 VLLGENATDIKLRWDFDLQEDNLQRVNLELLNTAKKGSRILITGVSAGHSGRVFSN 1617
>SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 1151
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = -3
Query: 363 SPDRPWAKPDDPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNF 184
SP P PD P ME PK GKT+A+ + ++ +VT N
Sbjct: 38 SPFPPSKSPDSPYCMEPPKPTPKESMRGKTLAKKATLKKATGSCNILANAVTWGVTIINV 97
Query: 183 DVLDFKLS 160
D + +L+
Sbjct: 98 DKVQERLA 105
>SB_59502| Best HMM Match : Arg_repressor (HMM E-Value=1.2)
Length = 277
Score = 28.3 bits (60), Expect = 6.4
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Frame = -3
Query: 540 VKSIGVSNFNSKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGS 361
+K I VSN ++L L++ + + + Q + LKE CEA G+K + +
Sbjct: 62 LKEILVSNDMQQKLSDALKNNSTETMTAQFT-------QALKEACEAAGMKYQNTKTVNN 114
Query: 360 P-DRPWAKPDDPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSR---IA 193
++PW DD E ++++ R+ K +R ++ + K R + A
Sbjct: 115 QNNKPWF--DDECKTEKENIRSLGYRISKEPNNHSLRDTLNRKRRIFKKMCKRKKENHYA 172
Query: 192 SNFDVLDFKLSR 157
+ + +DF+ S+
Sbjct: 173 NIINNIDFRNSK 184
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -1
Query: 671 YTGPRPTRKTALSSRPTNQVKSSSRTSITWTPGRLWSRSSKRVWSRASESPTSTRSSW 498
Y + +R+ SSR T++ +S R+ P R WSRS S +S S + T W
Sbjct: 323 YRALQRSRQHKPSSRNTSRSRSPVRSRSPIHP-RSWSRSVSHSLSHSSASRSPTPEDW 379
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 340 ARRPPAHGGPQTEGHR*QTREDCRPG-PHQIPDRQREHRDPEVRDEESDRE 191
A RPP G + H +RE+ PG P+ R E +VR +E RE
Sbjct: 242 ANRPPGPEGYRRPSHEGASREERPPGIPYPDNPRLGERPPIDVRRQEPGRE 292
>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 28.3 bits (60), Expect = 6.4
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -3
Query: 657 AYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSNFNSKQLERLLQHA 478
AY + G F Q K + SD+ V T ++P+ E L ++GVS KQ HA
Sbjct: 1146 AYSKHG--FTRSQLPKARESDIPLVVTLTVVQPVDTEALGMTLGVS---LKQKLSATDHA 1200
Query: 477 TVKPVVNQVECHPY-LNQKRLKEFC 406
+ V N E Y N R + C
Sbjct: 1201 LLFRVSNHAEYVVYRQNVVRSRVLC 1225
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 340 ARRPPAHGGPQTEGHR*QTREDCRPG-PHQIPDRQREHRDPEVRDEESDRE 191
A RPP G + H +RE+ PG P+ R E +VR +E RE
Sbjct: 8 ANRPPGPEGYRRPSHEGASREERPPGIPYPDNPRLGERPPIDVRRQEPGRE 58
>SB_13990| Best HMM Match : Ribosomal_L19 (HMM E-Value=4.1e-15)
Length = 267
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 474 VKPVVNQVECHPYLNQKRLKEFCEARGVKIT 382
+K + Q +CH L Q ++ EFC V +T
Sbjct: 115 IKTFLEQRDCHDRLQQLKVPEFCVGSTVAVT 145
>SB_12463| Best HMM Match : IPP-2 (HMM E-Value=1.2e-27)
Length = 197
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 157 PGELEVEHVKVARDPTPRHGLRDHD-----VPAVDLVSDEDLGDSLPESVSD 297
P + + H+K+ PTP + L+D D P+ D +SD++ P+++S+
Sbjct: 43 PEDKDYGHMKINEPPTPYNKLKDPDGEEGGGPSCDPISDDEPESLDPKALSE 94
>SB_48670| Best HMM Match : AT_hook (HMM E-Value=3)
Length = 207
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 630 PTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGV 523
P + K + SD+ +V T ++P+ E LV ++GV
Sbjct: 142 PNTKEAKARESDIHFVVTLTVVQPVDTEALVMALGV 177
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 295 R*QTREDCRPGPHQIPDRQREHRDPEVRDEESDREQ 188
R + +E+ RP P + P R E+ R+ DR++
Sbjct: 1020 RDRVKEEVRPNPEEKPPRDHEYSRERDREHSRDRDR 1055
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 689 TWICT*YTGPRPTRKTALSSRP 624
T C YTGP+PT T SRP
Sbjct: 2219 TPFCRPYTGPKPTGPTPTPSRP 2240
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,697,101
Number of Sequences: 59808
Number of extensions: 439467
Number of successful extensions: 1678
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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