Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a18r
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.92 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 25/94 (26%), Positives = 40/94 (42%)
 Frame = -2

Query: 700 ERSVLGSVPDTLAPGLQGRRLSLPDRPIR*NPVLGRRLRGHLEGYGAARQRGSGQEHRSL 521
           ++S+LGS+  +L+   + RR    D  +  N      +    E   +     SG E  S 
Sbjct: 7   DQSLLGSIARSLSLDRRARR-GAADLSLAGNATKVNTVH---EEESSLNDLFSGPEESSG 62

Query: 520 QLQLEAAGEVAAARDCQAGRQSGGMSSLPQPETP 419
            ++L    + AAA    +    GG SS P P +P
Sbjct: 63  GVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSP 96


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 258 IRYQIDSGNIVIPKSV 211
           +R  IDSGN++ P+ V
Sbjct: 350 LRDAIDSGNVITPQGV 365


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 399  RGVKITAYSPLGSPDRPWAKPDDPQLMED 313
            RG    A + +G P R W K    Q+  D
Sbjct: 1328 RGSATLACNAVGDPTREWYKGQGEQIRTD 1356


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -1

Query: 578 PGRLWSRSSKRVWSRASESPTSTRSSWRGCCSTRLSS 468
           P   W  +S      A +SP  + SS    CS  ++S
Sbjct: 470 PAASWGSASDVTLDEAVKSPLGSVSSTESTCSGEVAS 506


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 399  RGVKITAYSPLGSPDRPWAKPDDPQLMED 313
            RG    A + +G P R W K    Q+  D
Sbjct: 1324 RGSATLACNAVGDPTREWYKGQGEQIRTD 1352


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -2

Query: 364 LAGQTLGQARRPPAHGGPQTEGHR*QTREDCRPGPHQ 254
           L G+T+G     P     +TE  + +T++   P  +Q
Sbjct: 518 LKGETVGLLNALPPSSMKETEEEKKKTKQSLSPSENQ 554


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 488 CSTRLSSRSSIRW 450
           CS R S+ S +RW
Sbjct: 19  CSVRCSAASGLRW 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,781
Number of Sequences: 438
Number of extensions: 3445
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)