Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a18f
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.81 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 25/94 (26%), Positives = 40/94 (42%)
 Frame = +1

Query: 343 ERSVLGSVPDTLAPGLQGRRLSLPDRPIR*NPVLGRRLRGHLEGYGAARQRGSGQEHRSL 522
           ++S+LGS+  +L+   + RR    D  +  N      +    E   +     SG E  S 
Sbjct: 7   DQSLLGSIARSLSLDRRARR-GAADLSLAGNATKVNTVH---EEESSLNDLFSGPEESSG 62

Query: 523 QLQLEAAGEVAAARDCQAGRQSGGMSSLPQPETP 624
            ++L    + AAA    +    GG SS P P +P
Sbjct: 63  GVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSP 96


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 377 SVSGTDPSTERSDCPGSPAGHRAPSPGDETCSTVSKL*TDLP 252
           S SG +  TE+ D P S +   AP+    +  +  K   D+P
Sbjct: 578 SDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDMP 619



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 465 PGRLWSRSSKRVWSRASESPTSTRSSWRGCCSTRLSS 575
           P   W  +S      A +SP  + SS    CS  ++S
Sbjct: 470 PAASWGSASDVTLDEAVKSPLGSVSSTESTCSGEVAS 506


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 196 VSVNIGTVDVSVANVNGILDCLRHLAWLR 110
           V VN G   V + NVN     ++   WLR
Sbjct: 52  VHVNFGLAFVQLINVNEKNQIMKSNVWLR 80


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 193 KREGSRRSYNQQN*GRSRNEGRSVHN 270
           KR G+R++ NQ N   +      VH+
Sbjct: 514 KRNGNRQNDNQNNQNDNNRNDNQVHH 539


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 156 MSMASLTACVTSPGFDFHVPNPNTGIVSP 70
           M + S++ CVT    + H  +P T  ++P
Sbjct: 315 MILVSISICVTVVVLNVHFRSPQTHKMAP 343


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 156 MSMASLTACVTSPGFDFHVPNPNTGIVSP 70
           M + S++ CVT    + H  +P T  ++P
Sbjct: 315 MILVSISICVTVVVLNVHFRSPQTHKMAP 343


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -2

Query: 234 LILLVIASPTSFSFP*T*AQSMCR*PMSMASLTACVTSPGFDFHVPNPNTGIVSP 70
           L+L  I  PTS   P           M + + + CVT    + H  +P T +++P
Sbjct: 287 LLLAEIIPPTSLVVPLL--GKFVLFTMILDTFSICVTVVVLNVHFRSPQTHVMAP 339


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 555 CSTRLSSRSSIRW 593
           CS R S+ S +RW
Sbjct: 19  CSVRCSAASGLRW 31


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 426 DWSVGKREPSS 394
           DWSVGK+  +S
Sbjct: 42  DWSVGKKNSNS 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,144
Number of Sequences: 438
Number of extensions: 4171
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)