Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a17r
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59792| Best HMM Match : RVT_1 (HMM E-Value=4.2039e-45) 28 8.5
SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_51388| Best HMM Match : RVT_1 (HMM E-Value=0) 28 8.5
SB_42960| Best HMM Match : RVT_1 (HMM E-Value=2.38221e-44) 28 8.5
SB_27537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_17181| Best HMM Match : RVT_1 (HMM E-Value=0) 28 8.5
SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0) 28 8.5
SB_45340| Best HMM Match : RVT_1 (HMM E-Value=1.2e-15) 28 8.5
SB_39321| Best HMM Match : RVT_1 (HMM E-Value=4.5e-39) 28 8.5
SB_38334| Best HMM Match : RVT_1 (HMM E-Value=5.60519e-45) 28 8.5
SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18) 28 8.5
SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_59792| Best HMM Match : RVT_1 (HMM E-Value=4.2039e-45)
Length = 565
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 537 LKYYSVKIFLIFIQNDLLTSRPQCVKLK 620
L YY ++ L+ D LT R QCV L+
Sbjct: 221 LSYYGIRGSLLTWMEDFLTQRSQCVTLE 248
>SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 197 HSLYFNQSCLILPDFFKYFKVICFV*YS 114
H LY L+L D F+ F+ +C YS
Sbjct: 483 HDLYLESDVLLLADVFEKFRNVCLENYS 510
>SB_51388| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 670
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 537 LKYYSVKIFLIFIQNDLLTSRPQCVKLK 620
L YY ++ L+ D LT R QCV L+
Sbjct: 221 LSYYGIRGSLLTWMEDFLTQRSQCVTLE 248
>SB_42960| Best HMM Match : RVT_1 (HMM E-Value=2.38221e-44)
Length = 455
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 537 LKYYSVKIFLIFIQNDLLTSRPQCVKLK 620
L YY ++ L+ D LT R QCV L+
Sbjct: 111 LSYYGIRGSLLTWMEDFLTQRSQCVTLE 138
>SB_27537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 396
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 537 LKYYSVKIFLIFIQNDLLTSRPQCVKLK 620
L YY ++ L+ D LT R QCV L+
Sbjct: 52 LSYYGIRGSLLTWMEDFLTQRSQCVTLE 79
>SB_17181| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 668
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 537 LKYYSVKIFLIFIQNDLLTSRPQCVKLK 620
L YY ++ L+ D LT R QCV L+
Sbjct: 324 LSYYGIRGSLLTWMEDFLTQRSQCVTLE 351
>SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1126
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 537 LKYYSVKIFLIFIQNDLLTSRPQCVKLK 620
L YY ++ L+ D LT R QCV L+
Sbjct: 782 LSYYGIRGSLLTWMEDFLTQRSQCVTLE 809
>SB_45340| Best HMM Match : RVT_1 (HMM E-Value=1.2e-15)
Length = 447
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 537 LKYYSVKIFLIFIQNDLLTSRPQCVKLK 620
L YY ++ L+ D LT R QCV L+
Sbjct: 103 LSYYGIRGSLLTWMEDFLTQRSQCVTLE 130
>SB_39321| Best HMM Match : RVT_1 (HMM E-Value=4.5e-39)
Length = 900
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 537 LKYYSVKIFLIFIQNDLLTSRPQCVKLK 620
L YY ++ L+ D LT R QCV L+
Sbjct: 556 LSYYGIRGSLLTWMEDFLTQRSQCVTLE 583
>SB_38334| Best HMM Match : RVT_1 (HMM E-Value=5.60519e-45)
Length = 435
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 537 LKYYSVKIFLIFIQNDLLTSRPQCVKLK 620
L YY ++ L+ D LT R QCV L+
Sbjct: 221 LSYYGIRGSLLTWMEDFLTQRSQCVTLE 248
>SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18)
Length = 1061
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 537 LKYYSVKIFLIFIQNDLLTSRPQCVKLK 620
L YY ++ L+ D LT R QCV L+
Sbjct: 717 LSYYGIRGSLLTWMEDFLTQRSQCVTLE 744
>SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 913
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 537 LKYYSVKIFLIFIQNDLLTSRPQCVKLK 620
L YY ++ L+ D LT R QCV L+
Sbjct: 779 LSYYGIRGSLLTWMEDFLTQRSQCVTLE 806
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,576
Number of Sequences: 59808
Number of extensions: 250677
Number of successful extensions: 582
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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