Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a17f
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    36   0.004
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    31   0.13 
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      31   0.17 
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    28   1.2  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   2.0  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    27   2.0  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   2.7  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    27   2.7  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   2.7  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   8.3  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    25   8.3  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    25   8.3  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 140 YLSAIGLK-PFKMNKTCARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLN 292
           +L  + L+ P +    C +C ++V  T ++    K WH  CFKC  C+  L+
Sbjct: 8   HLDRLSLETPSERTCFCIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLD 59


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 176 NKTCARCEKTVYPTEELKCLDKVWHKGCFKCQECS 280
           +K CA C + +   + ++ L  ++H  CF+C +C+
Sbjct: 113 SKICASCGQVI-SGQYVRALGNIYHLECFRCHDCN 146


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 179 KTCARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTL-NMRTYXGYGKLPYC 331
           K+C  C  ++     +    K  H  CFKC  CS  L ++  Y   GK  YC
Sbjct: 256 KSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKF-YC 306


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +2

Query: 170 KMNKTCARCEKTVYPTEE-LKCLDKVWHKGCFKCQECSMTL 289
           K +  C RC +     E  +     +WHK CF C +C   L
Sbjct: 14  KGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGL 54



 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 182 TCARCEKTVYPTEELKCLDKVWHKGCFKCQEC 277
           TC  C   +     +   D  +H+ CF+C +C
Sbjct: 77  TCTACRMRIKDYALMSGYDS-YHRECFRCHDC 107


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 317 KLPYCEAHVPKAKPTTMAETPELKRIAE 400
           K+P    H+    P++ A TP +KR+++
Sbjct: 71  KIPSAVPHISTPNPSSGASTPNIKRVSD 98


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +2

Query: 191 RCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAHVPKAKPTTMA 370
           RC K + P+EEL+ L +V +       E   TL + +       P     + +   TT  
Sbjct: 36  RCTKDIIPSEELRYLRQVLNDSIPSKDEPLPTLKLDSLNDISGEPVIPKIIHQTWKTT-- 93

Query: 371 ETPELKRIAENTKLQSNVKYHADFE 445
           E PE  + A+    QS +  H D+E
Sbjct: 94  EVPEGWKGAQ----QSCIDLHPDYE 114


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 591 FSLICLCLSIWAFFSR-SPWYATLLMIFVFALIL 493
           FSL  L +S+  FF + +P+Y+ L  +  FAL+L
Sbjct: 16  FSLCTLVISVPFFFLQMTPFYSILCFLSFFALLL 49


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -1

Query: 525 LLMIFVFALILKVSGSSATCVNFPLLLSKSAWYFTLLCSFVFSAIRFNSGVSAIVVGFAF 346
           L+  F+F  ++ +    +T   F L +S    +  L C+F+ ++   +  V  I VG AF
Sbjct: 193 LICWFIFTFLVLLCTVRSTLAFFSLFMSLDVCFLLLACAFLRTS-DGSPNVVLIRVGGAF 251

Query: 345 G 343
           G
Sbjct: 252 G 252


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 377 PELKRIAENTKLQSNVKYHADFERSK 454
           PE++RIA +  L +NVK  A+ +R +
Sbjct: 376 PEIRRIARHRHLPTNVKKAAEIKREE 401


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = +2

Query: 428 YHADFERSK--GKFTQVADD 481
           YHADFE+SK  GKF     D
Sbjct: 637 YHADFEKSKSVGKFDSAKYD 656


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 204 VFSHLAQVLFILNGFKPIALK 142
           V S    +++ILN FKPI LK
Sbjct: 141 VISKEKHLVYILNSFKPILLK 161


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 493 KDQSEHEDHK*RGVPRRSREESPDGEAEADQRK 591
           K++ E +D K +   R+S EES DGE+   ++K
Sbjct: 471 KEKKEKKDKKHKKSKRKS-EESEDGESPKKKKK 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,796
Number of Sequences: 5004
Number of extensions: 43673
Number of successful extensions: 124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)