Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a17f
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 60 1e-09
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 56 3e-08
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 56 3e-08
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 53 2e-07
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 52 3e-07
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 49 3e-06
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 44 7e-05
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 42 4e-04
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 40 0.002
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 35 0.056
08_01_0526 + 4575160-4576719 31 0.52
01_05_0389 + 21716056-21716191,21716275-21716597,21716889-217175... 29 3.7
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 28 4.8
08_02_0822 + 21549257-21550729,21550776-21550877 28 6.4
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 60.5 bits (140), Expect = 1e-09
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
C C KTVYP ++L V+H+ CFKCQ C TL++ Y +PYC+ H
Sbjct: 9 CKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPH 60
Score = 48.0 bits (109), Expect = 6e-06
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
CA C KT YP E++ + +HK CFKC ++ Y + YC+ H
Sbjct: 108 CATCSKTAYPLEKVTVEGQAYHKSCFKCSHGGCAISPSNYAALEGILYCKHH 159
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 55.6 bits (128), Expect = 3e-08
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
C C+KTVY ++L ++V+HK CF+C C TL + Y + + YC H
Sbjct: 12 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPH 63
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGY-GKLPYCEAH 340
C C KTVYP E + + ++HK CFKC T++ Y + GKL YC+ H
Sbjct: 110 CVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL-YCKHH 161
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAHVPKAKPTT 364
C C +TVYP EEL +V+H+ CF+C C TL Y + YC+ H + +T
Sbjct: 13 CDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATLQFSNYSSVEGVLYCKPHYDQILKST 72
Query: 365 MAETPELKRIAENTKLQSN 421
+ + +++ K + +
Sbjct: 73 GSLEKSFEGTSKSAKAEKS 91
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGY-GKLPYCEAH 340
C C KTVYP E++ +HK CF+C TL+ + GKL YC+ H
Sbjct: 112 CVVCNKTVYPLEKVNLNGSSYHKSCFRCTHGGCTLSPSNNVTHEGKL-YCKTH 163
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
CA C+KTVYP E+L + +HK CFKC L +Y + YC+ H
Sbjct: 106 CAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALNGILYCKIH 157
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
C C+KTV+ + L +HK CFKC C TL+M Y + YC+ H
Sbjct: 10 CKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTH 61
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 52.4 bits (120), Expect = 3e-07
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
CA C+KTVYP E+L + +HK CFKC L +Y + YC+ H
Sbjct: 105 CAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIH 156
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
C C+KTV+ + L +HK CFKC C L+M +Y + YC+ H
Sbjct: 10 CTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTH 61
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
C C+KTVYP E++ + +H+ CFKC L +Y + + YC+ H
Sbjct: 104 CTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLLTNASYASHNGILYCQNH 155
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
C C+KTV+ + L +HK CF+C C TL+M +Y + YC+ H
Sbjct: 10 CNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKTH 61
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 44.4 bits (100), Expect = 7e-05
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 176 NKTCARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPY 328
++TCA C+ + L C+D VWH CF+C C+ ++ + + PY
Sbjct: 254 SRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPY 304
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 179 KTCARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPY 328
+TCA C + L C+ VWH CF+C C+ + + G PY
Sbjct: 556 RTCAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPY 605
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 39.5 bits (88), Expect = 0.002
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 179 KTCARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLN 292
+ CA C+ + L C+D VWH CF+C C ++
Sbjct: 176 RVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPIS 213
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 34.7 bits (76), Expect = 0.056
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 179 KTCARCEKTVYPTEELKCLDKVWHKGCFKCQEC 277
+ C C+ + L CL WH CF+C C
Sbjct: 112 RVCGGCKHEIGHGHYLSCLGMYWHPQCFRCSSC 144
>08_01_0526 + 4575160-4576719
Length = 519
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 510 VFALILKVSGSS-ATCVNFPLLLSKSAWYFTLLCSFVFSAIRFNSGVSAIVVGF 352
VFAL ++ +G S A CVN L + T+LC F F +G ++ F
Sbjct: 415 VFALEIRSAGQSIAVCVNMMLTFVIGQAFLTMLCHLKFGLFYFFAGWMLVMTTF 468
>01_05_0389 +
21716056-21716191,21716275-21716597,21716889-21717518,
21717602-21718054
Length = 513
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -1
Query: 585 LICLCLSIWAF-FSRSPWYATLLMIFVFALILKVSGSSATCV-NFPLLLSKSAWYFTLLC 412
++C+C+ + AF +S P L+ +F L ++ + S V N + + +LC
Sbjct: 391 VLCICVFVSAFAWSWGP-LGWLVPSEIFPLEIRSAAQSVVVVFNMAFTFIIAQIFLMMLC 449
Query: 411 SFVFSAIRFNSGVSAIVVGFAF 346
F F + I+ GF F
Sbjct: 450 HLKFGLFYFFGAMELIMTGFVF 471
>05_07_0247 + 28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 332 EAHVPKAKPTTMAETPELKRIAENTKLQSNVKYHADFERSK 454
E H+P + + ETP ++R+ E L++ + D E S+
Sbjct: 1080 EGHIPSSADISRKETPGVQRLKEQGSLRTEREREKDKEASR 1120
>08_02_0822 + 21549257-21550729,21550776-21550877
Length = 524
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 311 YGKLPYCEAHVPKAKPTTMAETPELKRIAENTKLQSNVKYHADF 442
Y +L E+H+ +P+T ETP + E+ SN+ HA+F
Sbjct: 461 YEQLNMIESHM---RPSTSQETPRNDQSLESVLESSNMSNHANF 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,416
Number of Sequences: 37544
Number of extensions: 268526
Number of successful extensions: 678
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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