Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a17f
(591 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 56 2e-08
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 54 5e-08
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 53 2e-07
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 51 7e-07
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 49 2e-06
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 49 2e-06
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 43 1e-04
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 35 0.035
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 33 0.19
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 30 1.0
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 30 1.3
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa... 29 1.8
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 29 3.1
At3g09670.1 68416.m01146 PWWP domain-containing protein 28 4.1
At1g34580.1 68414.m04298 monosaccharide transporter, putative si... 28 4.1
At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein ... 27 7.1
At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3, ubiqu... 27 9.4
At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein ... 27 9.4
At1g56610.1 68414.m06511 syntaxin-related family protein similar... 27 9.4
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 55.6 bits (128), Expect = 2e-08
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
C C+KTVY ++L ++V+HK CF+C C TL + Y + + YC H
Sbjct: 10 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61
Score = 50.4 bits (115), Expect = 9e-07
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGY-GKLPYCEAH 340
C C+KTVYP E++ ++HK CFKC T++ Y + GKL YC+ H
Sbjct: 110 CVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKL-YCKHH 161
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 54.4 bits (125), Expect = 5e-08
Identities = 31/84 (36%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAHVPK----- 349
C CEKTVYP E L +HK CFKC C L + Y + YC H +
Sbjct: 10 CRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLFKES 69
Query: 350 ----------AKPTTMAETPELKR 391
AKP T TPEL R
Sbjct: 70 GSFSKNFQSPAKPLTDKPTPELNR 93
Score = 48.8 bits (111), Expect = 3e-06
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
CA C KTVYP E++ + +HK CFKC ++ Y + YC+ H
Sbjct: 109 CATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHH 160
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
CA CEKTVYP E+++ + +HK CF+C TL +Y + YC H
Sbjct: 104 CAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHH 155
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
C C+KTVY + L +HK CF+C C TL M Y + YC+ H
Sbjct: 10 CNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTH 61
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 50.8 bits (116), Expect = 7e-07
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
C CEKTVY E L +HK CFKC C L + +Y + YC+ H
Sbjct: 10 CKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
CA C KTVYP E++ + +HK CFKC ++ Y + YC+ H
Sbjct: 108 CATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHH 159
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
CA C+KTVYP E++ + +HK CF+C L +Y + YC+ H
Sbjct: 107 CAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVH 158
Score = 46.4 bits (105), Expect = 1e-05
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
C C+KTVY + + +HK CF+C C+ TL + Y + YC+ H
Sbjct: 11 CKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
CA C+KTVYP E++ + +HK CF+C L +Y + YC+ H
Sbjct: 106 CATCKKTVYPLEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVH 157
Score = 48.0 bits (109), Expect = 5e-06
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAH 340
C C+KTVY + L +HK CF+C C TL + Y + YC+ H
Sbjct: 10 CKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPH 61
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 167 FKMN-KTCARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEA 337
F+M+ + CA C + L CL+ +WH CF+C CS ++ + G P+ +A
Sbjct: 165 FQMDFRICAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKA 222
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 35.1 bits (77), Expect = 0.035
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQEC 277
C C V E + L +WH GCF C+ C
Sbjct: 347 CGGCNSAVKHEESVNILGVLWHPGCFCCRSC 377
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTY--XGYGKLPYCEAHVPKAKP 358
C C+ + + L WH CF C+ C + M Y + K YC H P
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYCPFHEVDGTP 260
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQEC 277
C C V + L +WH GCF C+ C
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRAC 316
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Frame = +2
Query: 242 VWHKGCFKCQECSMTL-----NMRTYXGYGKLPYCEAHVPK 349
VWH CF C C + +M Y KL Y E H PK
Sbjct: 4 VWHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPK 44
>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 248
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 260 FKCQECSMTLNMRTYXGYGKL-PYCEAHV 343
F C+ CS T+ +R++ YG + P+C +
Sbjct: 23 FYCRHCSRTIRLRSFGLYGPICPFCSREI 51
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/75 (20%), Positives = 24/75 (32%)
Frame = +2
Query: 185 CARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYXGYGKLPYCEAHVPKAKPTT 364
C C+ + + VWH CF C C + M + + + P
Sbjct: 1240 CKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISDLRGMYHKPCYKELRHPNC 1299
Query: 365 MAETPELKRIAENTK 409
++ R AE K
Sbjct: 1300 YVCEKKIPRTAEGLK 1314
>At3g09670.1 68416.m01146 PWWP domain-containing protein
Length = 726
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 314 GKLPYCEAHVPKAKPTTMAETPELKRIAENTKLQSNVKY-HADFERSKGKFTQVADDPET 490
G Y E VPK K T+AE KR++ + S+ K + K K Q T
Sbjct: 449 GVFEYEETIVPKKKEKTLAEFIAEKRVSRHNGNTSHEKSGNVPHCEKKRKVVQSKVPKST 508
Query: 491 LRIKAN 508
+IKAN
Sbjct: 509 KKIKAN 514
>At1g34580.1 68414.m04298 monosaccharide transporter, putative
similar to monosaccharide transporter 3 [Oryza sativa]
GI:11991114, monosaccharide transporter [Nicotiana
tabacum] GI:19885, monosaccharide transporter 1 [Oryza
sativa] GI:11991110; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 506
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 585 LICLCLSIWAF-FSRSPWYATLLMIFVFALILKVSGSS-ATCVNFPLLLSKSAWYFTLLC 412
++ LC+ F +S P + L+ +F L ++ +G S + VNF + S + LC
Sbjct: 393 VVLLCIYAAGFGWSWGP-LSWLVPSEIFPLKIRPAGQSLSVAVNFAATFALSQTFLATLC 451
Query: 411 SFVFSAIRFNSG 376
F + A F G
Sbjct: 452 DFKYGAFLFYGG 463
>At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein
(RRS1) family protein contains Pfam profile PF04939:
Ribosome biogenesis regulatory protein (RRS1); similar
to Ribosome biogenesis regulatory protein homolog
(Swiss-Prot:Q15050) [Homo sapiens]
Length = 318
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 317 KLPYCEAHVPKAKPTTMAETPELKRIAENTKLQSNV--KYHADFERSKGKFTQVADDPET 490
KLP E H+P+ KP T E LK+ + K + V + F+R G + +V DD +
Sbjct: 78 KLPR-EKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRHG-YDRVNDDNDV 135
Query: 491 LRIKA 505
I+A
Sbjct: 136 PIIEA 140
>At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3,
ubiquitin ligase; contains similarity to Apc1/Tsg24
protein, the largest subunit of human anaphase-promoting
complex (APC/C) GI:11967711 from [Homo sapiens]
Length = 1678
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 456 PLLLSKSAWYFTLLCSFVFSAIRFNSGVSAI 364
P S+S+W F L+ F + RF++G+++I
Sbjct: 521 PKTASESSWEFLLISKFHKTYSRFHNGITSI 551
>At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 374
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 567 SIWAFFSRSPWYATLLMIFVFALILKVSGSSA 472
++W SPW A +LMI+ F + V G +A
Sbjct: 213 TVWRAMKESPW-AVVLMIYCFIALWFVGGLTA 243
>At1g56610.1 68414.m06511 syntaxin-related family protein similar to
proteins At3g54160, At1g47920 (syntaxin SYP81),
At5g41830, At3g44180, At3g58890, At1g48390, At3g59270
[Arabidopsis thaliana]; contains a novel domain similar
to F-box that is shared among other proteins in
Arabidopsis
Length = 535
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 525 LLMIFVFALILKVSGSSATCVNFPLLLSKSAWYFTLLCSFVFSAIR 388
L++IF+F L + SS+ P W L+ F+FS I+
Sbjct: 5 LVLIFLFGFYLFLMKSSSIFPQRPFTFLYDLWVLLLVLRFLFSLIQ 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,637,475
Number of Sequences: 28952
Number of extensions: 226306
Number of successful extensions: 682
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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