Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a15r
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 30 0.32
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.75
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 27 1.7
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 1.7
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 3.0
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 4.0
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 9.2
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 25 9.2
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 29.9 bits (64), Expect = 0.32
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 376 SAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGW 519
S TT+ S + S ST PQTFP+SG + ++ + GW
Sbjct: 457 STSTTNPSATPTTGDPSNSTYGGPQTFPNSGNNPNFNRGIAGIVPPGW 504
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.75
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = -2
Query: 565 CTPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCPW 386
CT + + S+ +S P+T ++P + + P P S S+ + S+ +T
Sbjct: 229 CTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST----SSTDTNSSPLPTTSTS 284
Query: 385 CPPTVSLRPPARKARLPST 329
C + S+ PP + P T
Sbjct: 285 CTTSTSI-PPTGNSTTPVT 302
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 563 HPSDTIGLVSINRDVQPTDFISPVALSASEDLPES 459
HP+ T G VS N + P + V +LP S
Sbjct: 669 HPTGTFGNVSGNYNTSPAQSVGDVTAEEGSELPSS 703
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 1.7
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = -2
Query: 550 PLVSSASTGMSNPLTSSLPW---LCLPARTYPNPEMSAALAKSTANLESN*AASTCPWCP 380
P ++AST +S+ +S PW A + P P A +S L N +S PW
Sbjct: 407 PPWAAASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMN-PSSLPPWQQ 465
Query: 379 PT 374
PT
Sbjct: 466 PT 467
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -1
Query: 599 PSLVTETSAVRLHPSDTIGLVSI----NRDVQPTDFISPVALSASED 471
P L + TS +RL PSDT + + N ++ + +P+ S S D
Sbjct: 97 PILNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILESTSSD 143
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.6 bits (56), Expect = 3.0
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Frame = -1
Query: 623 YGLVVVINPSLVTETSAVRLHPSDTIGLVSINRDVQPTDFISPVALSASEDLPE-SGNVC 447
Y L+ + P L ++ R+ + IG + N V + SPV +EDLP +G+
Sbjct: 40 YNLLGRVVPYLKSKNWDTRVAAAKAIGGIVENVPVWNPNRTSPVKKEETEDLPSFNGDTE 99
Query: 446 GFGEVDGEPGEQLSCFDVSVVPADGLLEATSEEGQTSKYDVGTALVSDDVQVAVLLAGAD 267
+ E G S VV ++ L + SE + + + T S +++ ++ G D
Sbjct: 100 EKPFIKTEEGAPASSQSQVVVSSN--LTSNSEVSKLEEERLSTRSHSQEIK-PIVDFGPD 156
Query: 266 ENSA 255
E +A
Sbjct: 157 EETA 160
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 337 EVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKS 510
EV+PSS++ RP + S ++ P ++S PQ + + S L+ AT + S
Sbjct: 82 EVFPSSVMPQLRPLDSSLSVSPEMDGWPWHHNSSSNPQGYAWT-PSLLSSNATSYLHS 138
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 361 ASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKAT 495
+S P + TS + + P+TSP P T SS+ +T
Sbjct: 94 SSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNST 138
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 204 GGGLDPFDVFRDRHEGSS 257
G G+DPFD+ R G S
Sbjct: 423 GAGMDPFDILRAYQAGGS 440
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,764
Number of Sequences: 5004
Number of extensions: 38927
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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