Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a14f
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical ...    29   2.5  
U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...    27   10.0 

>AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical
           protein C13A2.6 protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 169 RYPRAWTRPNLHRKSRRRLHFPNF*HLQR 255
           RY   W   + H ++RR +  PN  H+QR
Sbjct: 374 RYNSTWIHYSYHDENRREIESPNLVHVQR 402


>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 399 SPLTATEEALSLGRVRSTLNFDLKMLKVTSLTTT 298
           S  T  +  +S GR+ S LNF   + ++T L TT
Sbjct: 126 SQYTPYQAEISQGRLESLLNFQTMIAEMTGLPTT 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,074,652
Number of Sequences: 27780
Number of extensions: 236537
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)