Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a12r
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    68   6e-14
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.73 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   9.0  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 68.1 bits (159), Expect = 6e-14
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = -2

Query: 487 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFDPA 386
           LQDVYKIGGIGTVPVGRVETGVLKPG +VVF PA
Sbjct: 1   LQDVYKIGGIGTVPVGRVETGVLKPGMVVVFAPA 34


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 419 QHTSFN-SADGHGTNTTDFVYVLQ 487
           ++ SFN +A+GHG NT+   Y  Q
Sbjct: 280 EYNSFNWTANGHGHNTSSHNYYAQ 303


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 433 ETGVLKPGTIVVFDPAIVAP 374
           ETG ++PG I    P +  P
Sbjct: 96  ETGSIRPGVIGGSKPRVATP 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,306
Number of Sequences: 336
Number of extensions: 2366
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)