Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a12r
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 155 4e-39
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 155 4e-39
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 155 4e-39
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 49 5e-07
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 45 8e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 30 0.26
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 28 1.0
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 4.2
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 26 4.2
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 7.3
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 25 9.7
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 9.7
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 25 9.7
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 155 bits (377), Expect = 4e-39
Identities = 68/91 (74%), Positives = 78/91 (85%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQD
Sbjct: 191 VSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQD 250
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDPA 386
VYKIGGIGTVPVGRVETGV+KPG IV F PA
Sbjct: 251 VYKIGGIGTVPVGRVETGVIKPGMIVTFAPA 281
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 155 bits (377), Expect = 4e-39
Identities = 68/91 (74%), Positives = 78/91 (85%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQD
Sbjct: 191 VSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQD 250
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDPA 386
VYKIGGIGTVPVGRVETGV+KPG IV F PA
Sbjct: 251 VYKIGGIGTVPVGRVETGVIKPGMIVTFAPA 281
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 155 bits (377), Expect = 4e-39
Identities = 68/91 (74%), Positives = 78/91 (85%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQD
Sbjct: 191 VSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQD 250
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDPA 386
VYKIGGIGTVPVGRVETGV+KPG IV F PA
Sbjct: 251 VYKIGGIGTVPVGRVETGVIKPGMIVTFAPA 281
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 49.2 bits (112), Expect = 5e-07
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = -2
Query: 553 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 410
L+EA+D+ + P R TD P + ++DV+ I G GTV GRVE G LK G
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKG 282
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 45.2 bits (102), Expect = 8e-06
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = -2
Query: 562 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG 425
G L+ ALD ++PP +P KPLRL + DVY+ TV GRVE G
Sbjct: 384 GPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAG 428
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.3 bits (65), Expect = 0.26
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = -2
Query: 613 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 434
+P K V K GK + L E + I PP + PLR L D + G + + R+
Sbjct: 206 IPMSKPILVSSKTGKNVEQILPEIIQKIPPPKGSENAPLRCLLIDSWYNSYQGVIGLVRI 265
Query: 433 ETGVLKPG 410
G +K G
Sbjct: 266 MEGFIKKG 273
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +3
Query: 513 GRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 650
G GG S+ P+ LPS + P L E +ML CH
Sbjct: 545 GAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 4.2
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Frame = +3
Query: 411 PGFNTPVSTLPTGTVPIP-PILYTSCR--GRRRGLSVGRAGGRMASRASMRH--FPSALP 575
P +N P G+VP+P P S R R S GR S H PS LP
Sbjct: 314 PNYNAPFQPAGVGSVPLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLP 373
Query: 576 SLRSTCHPLNQG 611
P G
Sbjct: 374 PADGVPKPTPDG 385
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +2
Query: 341 HQGHVTNVHW---ARGHNGGVKDNNGTWFQHTSFNSADGHGTNTTDFVYVLQGK 493
++G+ N+H R GVK T FQ + +DG TT Y LQ +
Sbjct: 79 YEGNPCNMHLLDLGRRVKEGVKKAGLTGFQFNTIGVSDGISMGTTGMRYSLQSR 132
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 420 NTPVSTLPTGTVPIPPIL 473
N P S LPT VP+P I+
Sbjct: 666 NPPTSALPTVPVPLPSII 683
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/54 (22%), Positives = 20/54 (37%)
Frame = +2
Query: 317 RVSHDHGGHQGHVTNVHWARGHNGGVKDNNGTWFQHTSFNSADGHGTNTTDFVY 478
R++ HG Q H+ + R +G N S + HGT ++
Sbjct: 144 RITDLHGNPQSHIQKLKSLRDCSGNFSLQNALEMARASLSHIASHGTREVLIIF 197
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 356 TNVHWARGHNGGVKDNNG 409
TN+H RGH GV +NG
Sbjct: 463 TNLHLYRGHRYGVVGHNG 480
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 654 LDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLK 544
LD + W++QP C + DG A L++NA LK
Sbjct: 149 LDKLKDRLWNVQPTCALTGDGLLE-GLAWLSQNAKLK 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,588
Number of Sequences: 5004
Number of extensions: 39502
Number of successful extensions: 152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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