Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a12r
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 115 3e-26
03_01_0547 + 4093196-4093657,4094267-4095148 115 3e-26
03_01_0544 + 4082528-4082989,4083585-4084466 115 3e-26
03_01_0543 + 4076981-4077442,4078145-4079026 115 3e-26
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 57 1e-08
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 51 9e-07
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 51 9e-07
02_04_0462 + 23131433-23132836 49 4e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 48 9e-06
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 48 9e-06
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 48 9e-06
03_01_0019 + 167900-168343,168567-168751,169076-169430 31 1.1
07_03_0843 - 21962223-21963815,21963957-21964607 30 1.9
10_01_0291 + 3010685-3010838,3010954-3011489 29 4.3
10_01_0290 + 2999775-2999928,3000281-3000816 29 4.3
10_01_0204 + 2199778-2200835,2201212-2201311 29 4.3
05_01_0142 - 940421-940701,941262-941574 28 5.7
02_03_0357 + 18075171-18077240 28 5.7
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117... 28 7.6
02_01_0772 - 5755371-5756654,5757808-5757834 28 7.6
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 115 bits (277), Expect = 3e-26
Identities = 58/91 (63%), Positives = 66/91 (72%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
ISG+ GDNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQD
Sbjct: 193 ISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQD 240
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDPA 386
VYKIGGIGTVPVGRVETGVLKPG +V F P+
Sbjct: 241 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPS 271
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 115 bits (277), Expect = 3e-26
Identities = 58/91 (63%), Positives = 66/91 (72%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
ISG+ GDNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQD
Sbjct: 193 ISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQD 240
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDPA 386
VYKIGGIGTVPVGRVETGVLKPG +V F P+
Sbjct: 241 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPS 271
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 115 bits (277), Expect = 3e-26
Identities = 58/91 (63%), Positives = 66/91 (72%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
ISG+ GDNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQD
Sbjct: 193 ISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQD 240
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDPA 386
VYKIGGIGTVPVGRVETGVLKPG +V F P+
Sbjct: 241 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPS 271
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 115 bits (277), Expect = 3e-26
Identities = 58/91 (63%), Positives = 66/91 (72%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
ISG+ GDNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQD
Sbjct: 193 ISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQD 240
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDPA 386
VYKIGGIGTVPVGRVETGVLKPG +V F P+
Sbjct: 241 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPS 271
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = -2
Query: 565 DGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPV-GRVETGVLKPGTIVVFDP 389
DG CL++A+D + PP+R KPLRLP+ DV+ +G V + G+VE G + G+ ++ P
Sbjct: 442 DGNCLLKAIDTLPPPSRDVSKPLRLPICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMP 501
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 50.8 bits (116), Expect = 9e-07
Identities = 24/59 (40%), Positives = 36/59 (61%)
Frame = -2
Query: 565 DGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFDP 389
DG CL E LD I P R P+R+P+ D YK +GTV +G++E+G ++ G ++ P
Sbjct: 206 DGPCLFEVLDCIEVPLRDPKGPVRMPIIDKYK--DMGTVVMGKIESGTIREGDSLLVMP 262
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 50.8 bits (116), Expect = 9e-07
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Frame = -2
Query: 625 PSTKMPWFKGWQVERKEGKAD--GKC----LIEALDAILP-PARPTDKPLRLPLQDVYKI 467
P ++P +G + +G D GK L++A+D +P P R DK +P++DV+ I
Sbjct: 219 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPDPVRQLDKSFLMPIEDVFSI 278
Query: 466 GGIGTVPVGRVETGVLKPG 410
G GTV GRVE G +K G
Sbjct: 279 QGRGTVVTGRVEQGTIKTG 297
>02_04_0462 + 23131433-23132836
Length = 467
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = -2
Query: 553 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 401
LI+++D +P P R TD P L ++DV+ I G GTV GR+E G +K G V
Sbjct: 260 LIDSVDNYIPVPQRQTDLPFLLAVEDVFSITGRGTVATGRIERGTVKVGDTV 311
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = -2
Query: 562 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGT-VPVGRVETGVLKPGTIVVFDP 389
G CL++A+D++ P+R KPL LP+ DV K G G++ETG ++ G+ V+ P
Sbjct: 459 GFCLLDAIDSLQLPSRDVSKPLILPICDVIKSQSTGQFAAFGKLETGAIRIGSKVLISP 517
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = -2
Query: 562 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGT-VPVGRVETGVLKPGTIVVFDP 389
G CL++A+D++ P+R KPL LP+ DV K G G++ETG ++ G+ V+ P
Sbjct: 459 GFCLLDAIDSLQLPSRDVSKPLILPICDVIKSQSTGQFAAFGKLETGAIRIGSKVLISP 517
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = -2
Query: 562 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFDP 389
G CL E LD I P R P+R+P+ D YK +GTV +G++E+G + G ++ P
Sbjct: 162 GPCLFEVLDCIQVPLRDPKGPVRMPIIDKYK--DMGTVVMGKIESGTISEGDNMLVMP 217
>03_01_0019 + 167900-168343,168567-168751,169076-169430
Length = 327
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +3
Query: 375 GATMAGSKTTMVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGRAGGRMASRASMR 554
G + S + P PV+ PT T P PPI + G G S G GG + +RA+
Sbjct: 44 GNASSSSSNSSTPSIPPPVA--PTPTAPTPPI-PSPGTGSSNGSSGGGGGGWLNARATWY 100
Query: 555 HFPS 566
P+
Sbjct: 101 GAPN 104
>07_03_0843 - 21962223-21963815,21963957-21964607
Length = 747
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 323 SHDHGGHQGHVTNV--HWARGHNGGVKDNNGTWFQHTSFNSADGHGTNTTDFVYVLQGK 493
+H G H G V V H RGHN +KD+ G + +FN+ D VYV +GK
Sbjct: 206 NHRKGHHAGIVKVVLDHPIRGHNLSLKDSTG---NNLNFNATD---VRIPMLVYVSRGK 258
>10_01_0291 + 3010685-3010838,3010954-3011489
Length = 229
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +3
Query: 483 CRGRRRGLSVGRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCHPE 656
C G+ V + G + A H+PSAL + + C P+ + I+ P PE
Sbjct: 105 CPGQEPSKIVPMSEGTFIAVAGQTHYPSALCASATICGPIKKKIIDHFHKKPVPPKPE 162
>10_01_0290 + 2999775-2999928,3000281-3000816
Length = 229
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +3
Query: 483 CRGRRRGLSVGRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCHPE 656
C G+ V + G + A H+PSAL + + C P+ + I+ P PE
Sbjct: 105 CPGQEPSKIVPMSEGTFVAIAGKTHYPSALCASATICGPIKKKIIDHFHKKPVPPKPE 162
>10_01_0204 + 2199778-2200835,2201212-2201311
Length = 385
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 429 VSTLPTGTVP-IPPILYTSCRGRRRGLSVGRAGGRMASRASMRHFPSALPSLRSTCHP 599
+S +P +V + + S R RRR ++ RAG R+ SRA +R PS S+ HP
Sbjct: 202 ISFVPCPSVSSVRSAIVFSARRRRRQSAIARAGARV-SRAGVR--PSPASSILVGVHP 256
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Frame = +2
Query: 323 SHDHGGHQGHVTN------VHWARGHNGGVKDNNGTWFQHTSF-NSADGHG 454
SH HGGH G+ + H GH+GG K +G H F + GHG
Sbjct: 137 SHGHGGHMGYGGHGGFGGYGHGYGGHHGG-KFKHGKHGHHGKFKHGKHGHG 186
>02_03_0357 + 18075171-18077240
Length = 689
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +2
Query: 347 GHVTNVHWARGHNGGVKDNNGT-----WFQHTSFNSADGHGTNTTDFVYVLQGKTQGLVS 511
G + HW + NG ++ + + W + SF DGHG+ + G G S
Sbjct: 535 GKILGDHWVKRRNGKIRQYSKSYLRISWMKVLSFLKDDGHGSGSGS----SSGSGSGHSS 590
Query: 512 GAGRWQDGIESFNEAF 559
++ ++FN AF
Sbjct: 591 SRMSIKEKFKNFNLAF 606
>10_01_0097 -
1171949-1172047,1172520-1172591,1172791-1172949,
1172998-1173381,1173478-1175253,1175329-1175452,
1176859-1177027,1177131-1177226,1177339-1177527,
1177965-1179303
Length = 1468
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 561 ENASLKLSMPSCHLPAPLTSPCVFPCKTYTKS 466
E A++ +S P LP P P +FP + T+S
Sbjct: 21 EEAAVVVSQPQKTLPVPTAGPSLFPQQEVTQS 52
>02_01_0772 - 5755371-5756654,5757808-5757834
Length = 436
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 462 PPILYTSCRGRRRGLSVGRAGGRMASRASMRHFPSALPSLRSTCHPL 602
PP+ ++C R G A R+ RA A PSLR++ HPL
Sbjct: 8 PPVDSSACLCRVERSVAGAAAARLMPRAKA----CAQPSLRASIHPL 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,442,569
Number of Sequences: 37544
Number of extensions: 325545
Number of successful extensions: 1367
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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