Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a12r
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                126   2e-29
SB_16487| Best HMM Match : ITAM (HMM E-Value=0.24)                     29   3.4  
SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)               29   4.4  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   28   5.9  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              28   5.9  
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             28   7.7  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  126 bits (304), Expect = 2e-29
 Identities = 59/90 (65%), Positives = 69/90 (76%), Gaps = 6/90 (6%)
 Frame = -2

Query: 637 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 476
           NM+  +++MPWFK W +ER      KE  A G  L E LD+ILPP+RP+  PLRLPLQDV
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 475 YKIGGIGTVPVGRVETGVLKPGTIVVFDPA 386
           YKIGGIGTVPVGRVETGVLKPGT+V F P+
Sbjct: 113 YKIGGIGTVPVGRVETGVLKPGTVVTFSPS 142


>SB_16487| Best HMM Match : ITAM (HMM E-Value=0.24)
          Length = 815

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +2

Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVKDNNGTWFQHTSFNSADGHGTNTTDFVYVL 484
           GH G  +   GGHQG  T+   + G   G+ +++   +Q  S +S  G+   +TD +   
Sbjct: 31  GHQGISTDSIGGHQGISTD---SIGGYQGISNDSIGGYQAISTDSIGGYQGISTDSIGGY 87

Query: 485 QGKTQGLVSG 514
           QG +   + G
Sbjct: 88  QGISTDSIGG 97


>SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)
          Length = 738

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 296 WARGHNGRVSHDHGG-HQGHVTNVHWARGHNGGVKDNNGTWFQHTSFNSADGHGTNTT 466
           W R H  R S+ HG   + HVT    +R  +  + + + T   H +  S  GH TNT+
Sbjct: 671 WIREHKERTSYGHGTVTRRHVTVTLRSRNRHFAITELSVT--PHNTSLSRYGHVTNTS 726


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 649 WHGDNMLEPSTKMPWFKGWQVERKE 575
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 392 VKDNNGTWFQHTSFNSA 442
           VK N G W+QH S NS+
Sbjct: 98  VKKNGGDWYQHESLNSS 114


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +2

Query: 296 WARGHNGRVSHDHGGHQGHVTNVHWARGHNGGV-KDNNGTW 415
           W RG  G +    GG  G  +   W R   GG+ +   G W
Sbjct: 24  WGRGQGGGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGW 64


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -2

Query: 508 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFDP 389
           ++P    + D Y + G+GTV  G    G+++    ++  P
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGP 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,995,866
Number of Sequences: 59808
Number of extensions: 342991
Number of successful extensions: 1252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)