Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a12r
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 161 5e-40
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 161 5e-40
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 161 5e-40
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 54 9e-08
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 48 6e-06
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 39 0.003
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 39 0.003
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 37 0.011
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 37 0.015
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 37 0.015
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 37 0.015
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 31 0.96
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 31 0.96
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 31 0.96
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 30 1.7
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 30 1.7
U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical pr... 29 2.9
AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAue... 29 2.9
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical pr... 27 8.9
AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical... 27 8.9
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 161 bits (390), Expect = 5e-40
Identities = 70/90 (77%), Positives = 80/90 (88%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
ISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQD
Sbjct: 159 ISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQD 218
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDP 389
VYKIGGIGTVPVGRVETG++KPG +V F P
Sbjct: 219 VYKIGGIGTVPVGRVETGIIKPGMVVTFAP 248
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 161 bits (390), Expect = 5e-40
Identities = 70/90 (77%), Positives = 80/90 (88%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
ISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQD
Sbjct: 193 ISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQD 252
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDP 389
VYKIGGIGTVPVGRVETG++KPG +V F P
Sbjct: 253 VYKIGGIGTVPVGRVETGIIKPGMVVTFAP 282
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 161 bits (390), Expect = 5e-40
Identities = 70/90 (77%), Positives = 80/90 (88%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
ISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQD
Sbjct: 193 ISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQD 252
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDP 389
VYKIGGIGTVPVGRVETG++KPG +V F P
Sbjct: 253 VYKIGGIGTVPVGRVETGIIKPGMVVTFAP 282
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 54.0 bits (124), Expect = 9e-08
Identities = 32/74 (43%), Positives = 37/74 (50%)
Frame = -3
Query: 651 DGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKTYT 472
D TETTC C GSRDG + RK L E S +L PS H A LT VF + T
Sbjct: 178 DSTETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCT 237
Query: 471 KSVVLVPCPSAELK 430
+S L P S L+
Sbjct: 238 RSEELEPSQSDVLR 251
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/94 (27%), Positives = 50/94 (53%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+D PLR+ + D
Sbjct: 353 VSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIGISD 399
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDPAIVA 377
V K+ V G++E+G ++ V ++ A
Sbjct: 400 VLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTA 433
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/94 (27%), Positives = 50/94 (53%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+D PLR+ + D
Sbjct: 371 VSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIGISD 417
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDPAIVA 377
V K+ V G++E+G ++ V ++ A
Sbjct: 418 VLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTA 451
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -2
Query: 610 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 440
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 439 RVETGVLKPG 410
+E GVLK G
Sbjct: 260 TLERGVLKKG 269
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -2
Query: 610 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 440
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 439 RVETGVLKPG 410
+E GVLK G
Sbjct: 260 TLERGVLKKG 269
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = -2
Query: 562 GKCLIEALDAILPP-ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFDP 389
G C IE +D +LP R + P+R + + Y +GTV +G++E+G ++ G +V P
Sbjct: 318 GPCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMP 374
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -2
Query: 574 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 410
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 281
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -2
Query: 574 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 410
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 282
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -2
Query: 574 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 410
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 282
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 314 GRVSHDHGGHQGHVTNVHW-ARGHNGGVKDNNGTWFQHTSFNSADGHGTN 460
G SHD+G H N H + GH+ D++G H + HG N
Sbjct: 353 GNHSHDNGHGHSHDHNDHGHSHGHDDHGHDSHGHSHDHNEHDHGHSHGGN 402
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 305 GHNGRVSH-DHGGHQGHVTNVHWARGHNGGVKDNNGTWFQHTSFNSADGHG 454
GH H DHG GH + H + GH+ D+N H+ + D HG
Sbjct: 360 GHGHSHDHNDHGHSHGHDDHGHDSHGHS---HDHNEHDHGHSHGGNNDNHG 407
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 314 GRVSHDHGGHQGHVTNVHW-ARGHNGGVKDNNGTWFQHTSFNSADGHGTN 460
G SHD+G H N H + GH+ D++G H + HG N
Sbjct: 371 GNHSHDNGHGHSHDHNDHGHSHGHDDHGHDSHGHSHDHNEHDHGHSHGGN 420
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 305 GHNGRVSH-DHGGHQGHVTNVHWARGHNGGVKDNNGTWFQHTSFNSADGHG 454
GH H DHG GH + H + GH+ D+N H+ + D HG
Sbjct: 378 GHGHSHDHNDHGHSHGHDDHGHDSHGHS---HDHNEHDHGHSHGGNNDNHG 425
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVKDNNGTWFQHTSFNSADGHG 454
GH+G SH H GH H A H+G ++G+ H + + GHG
Sbjct: 550 GHHG--SHHSPAHHGHHGEHHHAPAHHGH-HGHHGSHGVHHGHHESHGHG 596
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVKDNNGTWFQHTSFNSADGHG 454
GH+G +HG H GH H A H+G ++ H S +S HG
Sbjct: 517 GHHG----EHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHG 562
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 305 GHNGRVSHDHG-GHQGHVTNVHWARGHNGGVKDNNGTWFQHTSFNSADGHG 454
GH+G H H H GH H A H+G ++ H S +S HG
Sbjct: 456 GHHGE--HHHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHG 504
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -2
Query: 502 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFDP 389
P + D+Y + G+GT+ G + +G ++ I++ P
Sbjct: 373 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGP 410
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -2
Query: 502 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFDP 389
P + D+Y + G+GT+ G + +G ++ I++ P
Sbjct: 372 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGP 409
>U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical
protein F53A9.7 protein.
Length = 85
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 320 VSHDHGGHQGHVTNVHWARGHNGGVKDNNGTWFQHTSFNSADGHG 454
V H GGH GHV H H+G + + S + + HG
Sbjct: 35 VVHTDGGHHGHVDTHHHEESHHGEHHGGHHGVQHYESHHESHHHG 79
>Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical
protein W01G7.1 protein.
Length = 627
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 529 LPPARPTDKPLRLPLQDVYKIGGIGTVPVGR--VETGVLKPGTIVVFDPAIVAPSP 368
LPP P KP P+Q + +G I V + + + +G+ P IV P + P+P
Sbjct: 517 LPPPPPPPKPKPAPVQPI-SLGNINFVALAQQLIASGIKLPLPIVT-PPVVSTPAP 570
>AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAuer
Formation DAF-5,a Ski oncogene homolog involved in a
neuronal TGF betapathway (71.0 kD) (daf-5) protein.
Length = 627
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 529 LPPARPTDKPLRLPLQDVYKIGGIGTVPVGR--VETGVLKPGTIVVFDPAIVAPSP 368
LPP P KP P+Q + +G I V + + + +G+ P IV P + P+P
Sbjct: 517 LPPPPPPPKPKPAPVQPI-SLGNINFVALAQQLIASGIKLPLPIVT-PPVVSTPAP 570
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 326 HDHGGHQGHV-TNVHWARGHNGGVKDNNGTWFQHTSFNSADGHG 454
H GGH GH+ T+ H H+GG + + + S HG
Sbjct: 38 HTDGGHHGHMDTHHHHDSHHHGGHHGGHHGGHYESHYESHHHHG 81
Score = 23.8 bits (49), Expect(2) = 10.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 308 HNGRVSHDHGGHQG 349
H+ SH HGGH G
Sbjct: 50 HHHHDSHHHGGHHG 63
Score = 22.2 bits (45), Expect(2) = 10.0
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 323 SHDHGGHQGH 352
SH H GH GH
Sbjct: 76 SHHHHGHHGH 85
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 532 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFDPAI 383
I P R + + + + I G GTV G V GVL+ T + F PA+
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEF-PAL 239
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 532 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFDPAI 383
I P R + + + + I G GTV G V GVL+ T + F PA+
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEF-PAL 198
>Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical
protein C11H1.3 protein.
Length = 529
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 402 TMVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGRAGGRM 533
++V G N + +PT T P+ P + +S R +R S G M
Sbjct: 332 SLVEGLNGSPTPIPTVTDPVNPTVNSSTRRKRHSSSKSSNGKSM 375
>AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical
protein Y18D10A.17 protein.
Length = 340
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 302 RGHNGRVSHDHGGHQGHVTNVHWARG-HNGGVKDNNG 409
RG G + +GG+ + H RG +NGG + NNG
Sbjct: 284 RGRGG--NRGYGGYNNGYQHQHQHRGGYNGGYRQNNG 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,307,412
Number of Sequences: 27780
Number of extensions: 240131
Number of successful extensions: 909
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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