Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a12r
(659 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 179 3e-47
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 179 3e-47
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 174 5e-46
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 109 3e-26
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 26 0.28
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 26 0.28
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.9
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 21 7.9
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 21 7.9
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 179 bits (435), Expect = 3e-47
Identities = 80/91 (87%), Positives = 83/91 (91%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
ISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPTDK LRLPLQD
Sbjct: 136 ISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDKALRLPLQD 195
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDPA 386
VYKIGGIGTVPVGRVETGVLKPG +V F PA
Sbjct: 196 VYKIGGIGTVPVGRVETGVLKPGMVVTFAPA 226
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 179 bits (435), Expect = 3e-47
Identities = 80/91 (87%), Positives = 83/91 (91%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
ISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPTDK LRLPLQD
Sbjct: 193 ISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDKALRLPLQD 252
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDPA 386
VYKIGGIGTVPVGRVETGVLKPG +V F PA
Sbjct: 253 VYKIGGIGTVPVGRVETGVLKPGMVVTFAPA 283
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 174 bits (424), Expect = 5e-46
Identities = 77/91 (84%), Positives = 83/91 (91%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
ISGWHGDNMLEPS K PW+KGW+VERK+G ADGK LIEALDAILPP+RPTDK LRLPLQD
Sbjct: 193 ISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRPTDKALRLPLQD 252
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDPA 386
VYKIGGIGTVPVGRVETG+LKPG +V F PA
Sbjct: 253 VYKIGGIGTVPVGRVETGILKPGMLVTFAPA 283
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 109 bits (261), Expect = 3e-26
Identities = 46/52 (88%), Positives = 48/52 (92%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK 503
ISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPTDK
Sbjct: 120 ISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDK 171
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 26.2 bits (55), Expect = 0.28
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +2
Query: 362 VHWARGHNGGVKDNNGTWFQHTSFNSAD 445
+HW GHNGG T T+ + D
Sbjct: 1422 LHWKSGHNGGASLTGYTLHYRTAHGNLD 1449
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 26.2 bits (55), Expect = 0.28
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +2
Query: 362 VHWARGHNGGVKDNNGTWFQHTSFNSAD 445
+HW GHNGG T T+ + D
Sbjct: 1418 LHWKSGHNGGASLTGYTLHYRTAHGNLD 1445
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.0
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +2
Query: 359 NVHWARGHNGGVKD----NNGTWFQH-TSFNSADG--HGTNTTDFVYVLQG 490
N+ W GGVKD N W +NSAD GT T+ V G
Sbjct: 115 NLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNG 165
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.0
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +2
Query: 359 NVHWARGHNGGVKD----NNGTWFQH-TSFNSADG--HGTNTTDFVYVLQG 490
N+ W GGVKD N W +NSAD GT T+ V G
Sbjct: 115 NLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNG 165
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.9
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Frame = +2
Query: 359 NVHWARGHNGGVKD----NNGTWFQH-TSFNSADG--HGTNTTDFVYVLQG 490
N+ W GGVKD N W +NSAD GT T V G
Sbjct: 47 NLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.9
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Frame = +2
Query: 359 NVHWARGHNGGVKD----NNGTWFQH-TSFNSADG--HGTNTTDFVYVLQG 490
N+ W GGVKD N W +NSAD GT T V G
Sbjct: 47 NLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.9
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Frame = +2
Query: 359 NVHWARGHNGGVKD----NNGTWFQH-TSFNSADG--HGTNTTDFVYVLQG 490
N+ W GGVKD N W +NSAD GT T V G
Sbjct: 47 NLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.9
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Frame = +2
Query: 359 NVHWARGHNGGVKD----NNGTWFQH-TSFNSADG--HGTNTTDFVYVLQG 490
N+ W GGVKD N W +NSAD GT T V G
Sbjct: 47 NLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.9
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Frame = +2
Query: 359 NVHWARGHNGGVKD----NNGTWFQH-TSFNSADG--HGTNTTDFVYVLQG 490
N+ W GGVKD N W +NSAD GT T V G
Sbjct: 47 NLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.9
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Frame = +2
Query: 359 NVHWARGHNGGVKD----NNGTWFQH-TSFNSADG--HGTNTTDFVYVLQG 490
N+ W GGVKD N W +NSAD GT T V G
Sbjct: 47 NLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNG 97
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.4 bits (43), Expect = 7.9
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = +2
Query: 374 RGHNGGVKDNNGTWFQHTSFNSADGHGTNTTDF 472
RGH G G T FN+ + G + D+
Sbjct: 84 RGHGKGGSRGRGGNRGRTGFNNKNKDGDDNNDY 116
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.4 bits (43), Expect = 7.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 65 VIWLFFYILEMISNDNWFHSDWLDGTDDDRL 157
V+ L Y+L+ S F DGT++D L
Sbjct: 578 VVALVLYLLDRFSPFGRFKLANTDGTEEDAL 608
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,999
Number of Sequences: 438
Number of extensions: 2804
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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