Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a12r
(659 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 112 2e-25
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 112 2e-25
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 112 2e-25
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 112 2e-25
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 54 1e-07
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 48 7e-06
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 46 2e-05
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 42 3e-04
At2g31060.1 68415.m03790 elongation factor family protein contai... 32 0.39
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 31 0.90
At2g05510.1 68415.m00583 glycine-rich protein 31 0.90
At2g39560.1 68415.m04853 expressed protein 29 3.6
At2g05440.2 68415.m00575 glycine-rich protein 29 3.6
At2g05440.1 68415.m00574 glycine-rich protein 29 3.6
At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin... 29 3.6
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co... 28 4.8
At5g19490.1 68418.m02322 repressor protein-related similar to re... 28 6.3
At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co... 28 6.3
At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co... 28 6.3
At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi... 28 6.3
At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi... 28 6.3
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r... 27 8.4
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ... 27 8.4
At1g01060.2 68414.m00007 myb family transcription factor contain... 27 8.4
At1g01060.1 68414.m00006 myb family transcription factor contain... 27 8.4
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 112 bits (270), Expect = 2e-25
Identities = 56/90 (62%), Positives = 65/90 (72%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
ISG+ GDNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQD
Sbjct: 193 ISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQD 240
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDP 389
VYKIGGIGTVPVGRVETG++KPG +V F P
Sbjct: 241 VYKIGGIGTVPVGRVETGMIKPGMVVTFAP 270
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 112 bits (270), Expect = 2e-25
Identities = 56/90 (62%), Positives = 65/90 (72%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
ISG+ GDNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQD
Sbjct: 193 ISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQD 240
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDP 389
VYKIGGIGTVPVGRVETG++KPG +V F P
Sbjct: 241 VYKIGGIGTVPVGRVETGMIKPGMVVTFAP 270
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 112 bits (270), Expect = 2e-25
Identities = 56/90 (62%), Positives = 65/90 (72%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
ISG+ GDNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQD
Sbjct: 193 ISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQD 240
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDP 389
VYKIGGIGTVPVGRVETG++KPG +V F P
Sbjct: 241 VYKIGGIGTVPVGRVETGMIKPGMVVTFAP 270
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 112 bits (270), Expect = 2e-25
Identities = 56/90 (62%), Positives = 65/90 (72%)
Frame = -2
Query: 658 ISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQD 479
ISG+ GDNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQD
Sbjct: 193 ISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQD 240
Query: 478 VYKIGGIGTVPVGRVETGVLKPGTIVVFDP 389
VYKIGGIGTVPVGRVETG++KPG +V F P
Sbjct: 241 VYKIGGIGTVPVGRVETGMIKPGMVVTFAP 270
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = -2
Query: 553 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 410
L++A+D +P P R DKP +P++DV+ I G GTV GR+E GV+K G
Sbjct: 249 LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIEQGVIKVG 297
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 47.6 bits (108), Expect = 7e-06
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = -2
Query: 553 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 401
L++A+D +P P R T+ P L ++DV+ I G GTV GRVE G +K G V
Sbjct: 269 LMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVERGTVKVGETV 320
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = -2
Query: 562 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPV-GRVETGVLKPGTIVVFDPA 386
G CL++A+D++ P R KPL +P+ D + G V G++E G ++PG+ V+ P+
Sbjct: 447 GPCLLDAVDSVKSPDRDVSKPLLMPICDAVRSTSQGQVSACGKLEAGAVRPGSKVMVMPS 506
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = -2
Query: 562 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFDP 389
G E LD+I P R + P R+P+ D +K +GTV +G+VE+G ++ G +V P
Sbjct: 310 GPSFFEVLDSIEIPPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSIREGDSLVVMP 365
>At2g31060.1 68415.m03790 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain, PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 527
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = -2
Query: 601 KGW--QVERKEGKADGKCLIEALDAIL----PPARPTDKPLRLPLQDVYKIGGIGTVPVG 440
+GW K+ D K + + LDA++ PP D+P + + + K +G + G
Sbjct: 82 EGWASSTYTKDPPVDAKNMADLLDAVVRHVQPPKANLDEPFLMLVSMMEKDFYLGRILTG 141
Query: 439 RVETGVLKPG 410
RV +GV++ G
Sbjct: 142 RVTSGVVRVG 151
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 30.7 bits (66), Expect = 0.90
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 580 KEGKADGKCLIEALDAILPPARPTDKP 500
KE +A G + +ALD +PP RP KP
Sbjct: 74 KEAEAKGVAMGQALDIAIPPPRPKRKP 100
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 30.7 bits (66), Expect = 0.90
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVKDNNGTWFQHTSFNSADGHG 454
GH G H HGGH G H G+ GG + G H + GHG
Sbjct: 54 GHYGGGGHGHGGHNG--GGGHGLDGYGGGHGGHYGGGGGH--YGGGGGHG 99
>At2g39560.1 68415.m04853 expressed protein
Length = 233
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 405 MVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLS 509
+ P + TP ++ T P+ P+L SC GR+ +S
Sbjct: 144 ITPPYLTPRASPSLFTPPLTPLLMESCNGRKEEIS 178
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGG 391
GH G H HGGH G H G+ GG
Sbjct: 52 GHGGGGGHGHGGHNG--GGGHGLDGYGGG 78
>At2g05440.1 68415.m00574 glycine-rich protein
Length = 127
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGG 391
GH G H HGGH G H G+ GG
Sbjct: 52 GHGGGGGHGHGGHNG--GGGHGLDGYGGG 78
>At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase
1 [Arabidopsis thaliana] Swiss-Prot:Q42525
Length = 493
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 631 LEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 533
++ T W KG++V EGK CL EA++A
Sbjct: 189 IDSGTLSKWTKGFKVSGMEGKNVVACLNEAMEA 221
>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1611
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 377 GHNGGVKDNNGTWFQH-TSFNSA-DGHGTNTTD 469
G NGGV DN+ WF+ NS GH T D
Sbjct: 1531 GSNGGVLDNSAKWFRSGLDLNSGPGGHETEGRD 1563
>At5g19490.1 68418.m02322 repressor protein-related similar to
repressor protein [Oryza sativa] GI:18481624
Length = 236
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 450 TVPIPPILYTSCRGRRRGLSVGRAGGRMASRASMR 554
T + + +TSC RRG GR+ GR S S++
Sbjct: 92 TTQMHEVKHTSCGRGRRGRGRGRSSGRTGSGLSLK 126
>At3g48050.2 68416.m05239 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +2
Query: 377 GHNGGVKDNNGTWFQH-TSFNSA-DGHGTNTTD 469
G NGGV DN WF+ NS GH T D
Sbjct: 1531 GSNGGVLDNGAKWFRSGLDLNSGPGGHETEGRD 1563
>At3g48050.1 68416.m05238 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +2
Query: 377 GHNGGVKDNNGTWFQH-TSFNSA-DGHGTNTTD 469
G NGGV DN WF+ NS GH T D
Sbjct: 1531 GSNGGVLDNGAKWFRSGLDLNSGPGGHETEGRD 1563
>At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -3
Query: 657 FLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKT 478
FL+G+ T+ C+ S D ++ +L + A PS LP P C+ P +
Sbjct: 18 FLNGSRTSVTDGN-SCVYSDDENCVSKRQQLRKEAGQTEKRPSSILPKPSVVGCILPGEV 76
Query: 477 YTKSVV 460
TK VV
Sbjct: 77 -TKPVV 81
>At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -3
Query: 657 FLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKT 478
FL+G+ T+ C+ S D ++ +L + A PS LP P C+ P +
Sbjct: 18 FLNGSRTSVTDGN-SCVYSDDENCVSKRQQLRKEAGQTEKRPSSILPKPSVVGCILPGEV 76
Query: 477 YTKSVV 460
TK VV
Sbjct: 77 -TKPVV 81
>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
response factor 30 (GI:20145855) {Arabidopsis thaliana}
Length = 313
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +2
Query: 356 TNVHWARGHNGGVKDNNGTWFQHTSFNSADGHGTNT 463
T+ +W G + G ++GT H +S H + T
Sbjct: 75 TDTNWGWGSSSGSNHSSGTGSTHNGHSSGSNHSSGT 110
>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 612
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 409 YLVSTHQFQLCRRARYQYHRFCIRLA 486
Y + +HQF C++ Y H C L+
Sbjct: 334 YPIVSHQFYHCKKCNYSLHEVCAGLS 359
>At1g01060.2 68414.m00007 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 580 KEGKADGKCLIEALDAILPPARPTDKP 500
KE + G + +ALD +PP RP KP
Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100
>At1g01060.1 68414.m00006 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 580 KEGKADGKCLIEALDAILPPARPTDKP 500
KE + G + +ALD +PP RP KP
Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,714,820
Number of Sequences: 28952
Number of extensions: 230442
Number of successful extensions: 890
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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