Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a11r
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.11
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 30 0.25
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.75
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 0.99
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 28 1.3
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 5.3
SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p... 26 5.3
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 26 5.3
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 5.3
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 26 5.3
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 25 7.0
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.2
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 9.2
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 9.2
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.11
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 11/148 (7%)
Frame = -3
Query: 608 TGTDLLIQTTILPPLASRMSVAP---SATFWFG-SSTMLEAIGTKCIXXXXXXXXXXXVM 441
TG T +PP ++ + P ++T G SS+ L + T C
Sbjct: 294 TGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTT 353
Query: 440 PDAKPVVAPHALQVWT--PPDHSGEETLTHSTAMLVITSNASTRTGVLLVFS-----TPA 282
P P V P + + PP S T T S+ +L +++ +T T + + TP
Sbjct: 354 P-VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPT 412
Query: 281 VMPTSTRMAAGTPNPDAGSTPAHTVAPL 198
V PTS+ T N ++ +T P+
Sbjct: 413 VPPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Score = 29.9 bits (64), Expect = 0.32
Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 13/154 (8%)
Frame = -3
Query: 620 SSLLTGTDLLIQTTILPPL------ASRMSVAPSATFWFGS-STMLEAIGTKCIXXXXXX 462
+S+ TG + T I P + ++ + + P++T + S+ L T C
Sbjct: 233 TSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIP 292
Query: 461 XXXXXVMPDAKPVVAPHALQVWTPPDHSGEETLTHSTAMLVITSNASTR------TGVLL 300
P V TPP + + S++ L TS + T TG
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST 352
Query: 299 VFSTPAVMPTSTRMAAGTPNPDAGSTPAHTVAPL 198
TP V PTST + P P + S+ + +PL
Sbjct: 353 TPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPL 386
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 30.3 bits (65), Expect = 0.25
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = -3
Query: 362 THSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAAGTPNPDAGSTPAHTVAPLN*WHP 183
T ST + S+ S +T L+ S+P + + T + TP H++ P N
Sbjct: 539 TPSTTIPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTP------ALTHSITPSN---- 588
Query: 182 VFVLTTWLEDAVVTSGKPSFPTAMVELCIWATETLGSADPASTV*ELATPGLS--KSNE 12
T +++ S + ++++ +C T + S AS + L + +S KS+E
Sbjct: 589 -----TSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLASLISTLTSQQISSNKSSE 642
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 0.75
Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Frame = +2
Query: 371 PPHCGPA-GSKPV----TRA-GRPPAWRPALPTT*APKLKPI----RCTW--FQLPPALL 514
PP P+ G +P +RA PPA PA+P AP L P+ R + PP+L
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Query: 515 MSQTKKLPRARPTS---GTPAAAVL 580
S LP + P S G PAA L
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPL 449
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 0.99
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Frame = -3
Query: 428 PVVAPHALQVWTPPDHSGEETLTHSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAAG 249
PV AP A Q+ G++ S+ + ++++ ST V+ P PT A
Sbjct: 1270 PVAAPTAQQI-----QPGKQASAVSSNVPAVSASISTPPAVVPTVQHP--QPTKQIPTAA 1322
Query: 248 TPNPDAGSTPAHTV-----APLN*WHPVFVLTTWLEDAVVTSGKPSFP 120
+P ST +T APL L + AV TS KP P
Sbjct: 1323 VKDPSTTSTSFNTAPIPQQAPLENQFSKMSLEPPVRPAVPTSPKPQIP 1370
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2
Query: 114 NGGTLHMGNGNFGK 73
NGG +H G GNFGK
Sbjct: 706 NGGLIHQGVGNFGK 719
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 1 NMFVSFDLERPGVASSQTVEAGSALPKV 84
++ +++D+ RP + S+ VE SAL +
Sbjct: 154 SVIITYDVRRPNLGSTSFVEMSSALSNI 181
>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 335 TSNASTRTGVLLVFST-PAVMPTSTRMAA 252
+S+ASTR GV FST P+V P + AA
Sbjct: 55 SSSASTRKGVWNFFSTHPSVHPANDEHAA 83
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 52 TVEAGSALPKVSVAHMQSSTIAVGKLGFPDVTTASSNQVVST 177
T E G+ LPK HM++ T +V K+ D T + + V+T
Sbjct: 611 TSEKGNILPKTVETHMKALTTSVDKV--LDQTAEALEEFVNT 650
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 383 HSGEETLTHSTAMLVITSNASTRTGVLLVFSTPA 282
HSG+ T ++A+L + N + + V+L + TPA
Sbjct: 214 HSGKGWETFTSAVLQVALNRNRKGLVILAWGTPA 247
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 5.3
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 199 SGA-TV*AGVDPASGLGVPAAIRVEVGITAGVENTKSTPVRVDAFDVMTSIAV 354
SGA T+ AG P GLG EVGI+A N K +A + S AV
Sbjct: 428 SGARTLPAGCGPCIGLGTGLLKDGEVGISATNRNFKGRMGSREALAYLASPAV 480
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = -3
Query: 431 KPVVAPHALQVWTPPDHSGEETLTHSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAA 252
K ++ H WTP S T T + + + + T T +TP V +A
Sbjct: 36 KEIIDQHT-STWTPVVSSVTSTQTDTLRVTISEVVSVTATLTETFTATPTVTSVVHALAT 94
Query: 251 GTPNPD 234
P+PD
Sbjct: 95 TDPHPD 100
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 147 GNIWEAELSNCNGGTLHMGNGNFGKRGSGLYGLR 46
G ++ + + G LH +G FG RG G G R
Sbjct: 104 GPLFGPRIGGGHHGPLHGPHGGFGGRGGGRMGGR 137
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 596 LLIQTTILPPLASRMSVAPSATFWFGSSTML 504
L +QT +PP+ S+ PS SS+++
Sbjct: 656 LFVQTNCIPPVTQASSLVPSKNNTASSSSLM 686
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.0 bits (52), Expect = 9.2
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 22 LERPGVASSQTVEAGSALPKVSVAHMQSSTIAVGKLGFPDVTTASSNQ 165
L+R + SQ+ A S V +Q A G FPD+ T+SSNQ
Sbjct: 190 LDRSPSSFSQSRSAVSGNMNPGVGTLQQPQRA-GSDTFPDLNTSSSNQ 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,242
Number of Sequences: 5004
Number of extensions: 63055
Number of successful extensions: 206
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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