Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a11r
(640 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 33 0.16
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 31 0.65
At1g61080.1 68414.m06877 proline-rich family protein 30 1.1
At5g15860.2 68418.m01856 expressed protein 29 2.6
At5g15860.1 68418.m01855 expressed protein 29 2.6
At1g30860.1 68414.m03774 expressed protein 29 2.6
At3g16870.1 68416.m02157 zinc finger (GATA type) family protein ... 29 3.4
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 3.4
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 3.4
At3g02410.1 68416.m00228 hypothetical protein weak similarity to... 29 3.4
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 29 3.4
At1g14920.1 68414.m01783 gibberellin response modulator (GAI) (R... 29 3.4
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 28 4.5
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 28 4.5
At2g02780.1 68415.m00221 leucine-rich repeat transmembrane prote... 28 4.5
At5g16820.2 68418.m01971 heat shock factor protein 3 (HSF3) / he... 28 6.0
At5g16820.1 68418.m01970 heat shock factor protein 3 (HSF3) / he... 28 6.0
At2g25200.1 68415.m03014 expressed protein 28 6.0
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /... 28 6.0
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 27 7.9
At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyc... 27 7.9
At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferlin... 27 7.9
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +2
Query: 371 PPHCGPAGSKPVTRAGRPPAWRPALPTT*APKLKPIRCTWFQLPPA 508
PP C P KP + PP +PA P P KP+ C PPA
Sbjct: 65 PPACPPTPPKPQPKPAPPPEPKPAPP----PAPKPVPCPSPPKPPA 106
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 31.1 bits (67), Expect = 0.65
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +2
Query: 371 PPHCGPAGSKPVTRAGRPPAWRPALPTT*AP-KLKPIRCTWFQLPPALLMSQTKKLPRAR 547
PP P KP T +PP P P T P + P++ ++ PP + P +
Sbjct: 116 PPSVQPPTYKPPTPTVKPPTTSPVKPPTTPPVQSPPVQPPTYK-PPTSPVKPPTTTPPVK 174
Query: 548 PTSGTP 565
P + TP
Sbjct: 175 PPTTTP 180
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/65 (30%), Positives = 21/65 (32%)
Frame = +2
Query: 371 PPHCGPAGSKPVTRAGRPPAWRPALPTT*APKLKPIRCTWFQLPPALLMSQTKKLPRARP 550
PP P S PV P P P T P +KP T PP T P P
Sbjct: 141 PPTTPPVQSPPVQPPTYKPPTSPVKPPTTTPPVKPPTTTPPVQPPTYNPPTTPVKPPTAP 200
Query: 551 TSGTP 565
P
Sbjct: 201 PVKPP 205
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = +2
Query: 371 PPHCGPAGSKPVTRAGRPPAWRPALPTT*A---PKLKPIRCTWFQLPPALLMSQTKKLPR 541
PP P KP+ + PP P LPTT A P P R PP P
Sbjct: 492 PPPPTPPAFKPLKGSAPPPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPP 551
Query: 542 ARPTSGTPAA 571
P GT AA
Sbjct: 552 PPPPPGTQAA 561
>At5g15860.2 68418.m01856 expressed protein
Length = 299
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = -2
Query: 639 AVQDVNVIVVDWHRLANSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSLG 460
A +D+ V +D+ N T + V D + + +F+ I+ GG+ N+++L+G S G
Sbjct: 182 AERDIIVACLDYR---NFPQGTISDMVTDASQGI-SFVCNNISAFGGDPNRIYLMGQSAG 237
Query: 459 AHVVGNA 439
AH+ A
Sbjct: 238 AHIAACA 244
>At5g15860.1 68418.m01855 expressed protein
Length = 427
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = -2
Query: 639 AVQDVNVIVVDWHRLANSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSLG 460
A +D+ V +D+ N T + V D + + +F+ I+ GG+ N+++L+G S G
Sbjct: 182 AERDIIVACLDYR---NFPQGTISDMVTDASQGI-SFVCNNISAFGGDPNRIYLMGQSAG 237
Query: 459 AHVVGNA 439
AH+ A
Sbjct: 238 AHIAACA 244
>At1g30860.1 68414.m03774 expressed protein
Length = 730
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 213 HGRATELMASSVRTNHLVGRRCGNIWEAELSNCNGG 106
+ R E S R ++LV IWEA L+ NGG
Sbjct: 55 NNRVLESPLESKRNDNLVASSLVQIWEARLNRSNGG 90
>At3g16870.1 68416.m02157 zinc finger (GATA type) family protein
contains Pfam profile:PF00320 GATA:GATA zinc finger
Length = 190
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Frame = +1
Query: 352 VECVRVSSPLWSGG----VQTCNACG 417
V+C + +PLW GG CNACG
Sbjct: 45 VDCGTIRTPLWRGGPAGPKSLCNACG 70
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 28.7 bits (61), Expect = 3.4
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Frame = -2
Query: 591 NSNYNTAAAGVPDVGRAL----GNFLV-WLINNAGGNWNQVHLIGFSLGAHVVGNAGRQA 427
NSN NT G L GN V W G N + F G + G
Sbjct: 333 NSNSNTYMGGSSSGNNTLSGPFGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGT 392
Query: 426 GGRPARVTGLDPAGPQWGGNSNALNRNAGH 337
GG AR G + A P +S + N G+
Sbjct: 393 GGYAARNPGANKAAPSSSFSSASATNNTGY 422
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 28.7 bits (61), Expect = 3.4
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Frame = -2
Query: 591 NSNYNTAAAGVPDVGRAL----GNFLV-WLINNAGGNWNQVHLIGFSLGAHVVGNAGRQA 427
NSN NT G L GN V W G N + F G + G
Sbjct: 333 NSNSNTYMGGSSSGNNTLSGPFGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGT 392
Query: 426 GGRPARVTGLDPAGPQWGGNSNALNRNAGH 337
GG AR G + A P +S + N G+
Sbjct: 393 GGYAARNPGANKAAPSSSFSSASATNNTGY 422
>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
kynurenine formamidase [Mus musculus] GI:21552719
Length = 422
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = -2
Query: 639 AVQDVNVIVVDWHRLANSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSLG 460
A +D+ V +D+ N T + V D + + +F+ I+ GG+ N+++L+G S G
Sbjct: 177 AERDIIVACLDYR---NFPQGTISDMVSDAAQGI-SFVCNNISAFGGDPNRIYLMGQSAG 232
Query: 459 AHV 451
AH+
Sbjct: 233 AHI 235
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 28.7 bits (61), Expect = 3.4
Identities = 35/132 (26%), Positives = 50/132 (37%)
Frame = +2
Query: 110 PLQLESSASQMLPQRLPTKWLVRTLDAINSVARPCEQVLIRHPGWGFLPPFG*KSASPLG 289
P ++S + LP R PT+ ++ +S I H G S+SP
Sbjct: 453 PRMVQSPVTSPLPNRSPTQGSPASISRFHSSPSSLGITSILHDH-GSCKDEESTSSSP-- 509
Query: 290 LKIPRARPSVWMHST**PALRLSALEFPPHCGPAGSKPVTRAGRPPAWRPALPTT*APKL 469
A PS+ T P + P C P PV G PP+ A+ ++ P L
Sbjct: 510 -----ASPSISFLPTLHPLTSSQPKKASPQC-PQSPTPVHSNG-PPSAEAAVTSSPLPPL 562
Query: 470 KPIRCTWFQLPP 505
KP+R PP
Sbjct: 563 KPLRILSRPPPP 574
>At1g14920.1 68414.m01783 gibberellin response modulator (GAI)
(RGA2) / gibberellin-responsive modulator identical to
GAI GB:CAA75492 GI:2569938 [Arabidopsis thaliana] (Genes
Dev. In press)
Length = 533
Score = 28.7 bits (61), Expect = 3.4
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Frame = -2
Query: 489 QVHLIGFSLGAHVVGNAGRQA-----GGRPA-RVTGLDPAGPQWGGNSNALNRNAGHYVE 328
+VH+I FS+ + A QA GG P R+TG+ P P + + H E
Sbjct: 270 RVHVIDFSMSQGLQWPALMQALALRPGGPPVFRLTGIGPPAPDNFDYLHEVGCKLAHLAE 329
Query: 327 CIHTDGRALG-IFNPSGDAD 271
IH + G + N D D
Sbjct: 330 AIHVEFEYRGFVANTLADLD 349
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 28.3 bits (60), Expect = 4.5
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +2
Query: 305 ARPSVWMHST**PALRLS--ALEFPPHCGPAGSKPVTRAGRPPAWRPALPTT*APKLKPI 478
A P++ ST P+ R++ ++ P P G+ P + +PP+ R PT P+
Sbjct: 174 APPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPRPPSP 233
Query: 479 RCTWFQLPPALLMSQTKKLPRARPTSGTP 565
R A L + +L ARPT+ P
Sbjct: 234 RA-------ASLRADPPRLDAARPTTPRP 255
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 28.3 bits (60), Expect = 4.5
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +2
Query: 305 ARPSVWMHST**PALRLS--ALEFPPHCGPAGSKPVTRAGRPPAWRPALPTT*APKLKPI 478
A P++ ST P+ R++ ++ P P G+ P + +PP+ R PT P+
Sbjct: 173 APPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPRPPSP 232
Query: 479 RCTWFQLPPALLMSQTKKLPRARPTSGTP 565
R A L + +L ARPT+ P
Sbjct: 233 RA-------ASLRADPPRLDAARPTTPRP 254
>At2g02780.1 68415.m00221 leucine-rich repeat transmembrane protein
kinase, putative
Length = 753
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 246 PQPGCRINTCSHGRATELMASSVRTNHLVG 157
P P RI C HG TEL + RT+ L G
Sbjct: 64 PSPSLRI-ICLHGHVTELTVTGNRTSKLSG 92
>At5g16820.2 68418.m01971 heat shock factor protein 3 (HSF3) / heat
shock transcription factor 3 (HSTF3) identical to heat
shock transcription factor 3 (HSF3) SP:O81821 from
[Arabidopsis thaliana]
Length = 481
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 254 AGTPNPDAGSTPAHTVAPLN*WHPVFVL 171
AG P+ G +PA AP + W P F L
Sbjct: 342 AGLVQPNIGQSPAQGAAPADSWSPEFDL 369
>At5g16820.1 68418.m01970 heat shock factor protein 3 (HSF3) / heat
shock transcription factor 3 (HSTF3) identical to heat
shock transcription factor 3 (HSF3) SP:O81821 from
[Arabidopsis thaliana]
Length = 481
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 254 AGTPNPDAGSTPAHTVAPLN*WHPVFVL 171
AG P+ G +PA AP + W P F L
Sbjct: 342 AGLVQPNIGQSPAQGAAPADSWSPEFDL 369
>At2g25200.1 68415.m03014 expressed protein
Length = 354
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 217 AGVDPASGLGVPAAIRVEVGITAGVENTKSTPVR 318
+G DP SG V + EVG+ G N K P R
Sbjct: 139 SGPDPESGFYVAVFVSGEVGLLVGGGNLKQRPRR 172
>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
gibberellin-responsive modulator identical to GB:Y11336,
member of SCARECROW family
Length = 587
Score = 27.9 bits (59), Expect = 6.0
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Frame = -2
Query: 489 QVHLIGFSLGAHVVGNAGRQA-----GGRPA-RVTGLDPAGPQWGGNSNALNRNAGHYVE 328
+VH+I FS+ + A QA GG P R+TG+ P P + + + E
Sbjct: 322 RVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHEVGCKLAQLAE 381
Query: 327 CIHTDGRALG-IFNPSGDAD 271
IH + G + N D D
Sbjct: 382 AIHVEFEYRGFVANSLADLD 401
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 46 SQTVEAGSALPKVSVAHMQSSTIAVGKLGFPDVTTASSNQVVSTNTG 186
S + E + +V + HM+ +A+GKL D ++ + VV N G
Sbjct: 1040 STSQEVKNTHMEVKITHMEEPVLALGKLEAHDSSSDKPHCVVDVNGG 1086
>At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyclin
a2-type [Glycine max] GI:857397; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 442
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 288 PSGDADFYPNGGRNPQPGCRINTCSH 211
P GD NG RNP P + CS+
Sbjct: 35 PLGDITNQKNGSRNPSPSSTLVNCSN 60
>At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferling
(PFI) almost identical to tubulin folding cofactor E
(Pfifferling; PFI) GI:20514267 from [Arabidopsis
thaliana]; identical to cDNA tubulin folding cofactor E,
GI:20514266
Length = 531
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = -2
Query: 591 NSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSLGA----HVVGN 442
N + N+ ++ + + + L N V ++NN+G +W QV ++ SL H++GN
Sbjct: 192 NLSCNSLSSDIKSLPQ-LKNIRVLVLNNSGLSWTQVEILRRSLPGIEELHLMGN 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,639,879
Number of Sequences: 28952
Number of extensions: 374971
Number of successful extensions: 1258
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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