Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a10r
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    29   0.68 
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   3.6  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   3.6  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    25   6.3  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   6.3  
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    25   8.4  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   8.4  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   8.4  
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp...    25   8.4  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 22/75 (29%), Positives = 38/75 (50%)
 Frame = -2

Query: 577 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDA 398
           F+K+ KL  +K  I+G ++GA  A VT      KV ++  +D S   W  ++ R     A
Sbjct: 80  FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNS--PWYQDLPR--DYGA 133

Query: 397 QYVEVIHTDGSGVNK 353
            + ++I  D + + K
Sbjct: 134 YFRKMIQIDEANITK 148


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 314 KEVNVSNSNAQAVFVDTRSVGVNNFNVLSIVCSQ 415
           +E ++S ++  ++FV   S  VN F+V S+  S+
Sbjct: 176 REKSISKASEYSIFVGDLSPNVNEFDVYSLFASR 209


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 399 ASFVPSRSTLFSQSRAEGSRPVILATLPSK 488
           + F      +FS    EGSRPV LA L S+
Sbjct: 461 SGFSVREEAVFSSPTTEGSRPVSLARLKSE 490


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 72  KWNGYLMPVFTRNIPDPCFTSL 137
           K +GY+ P+F   +P  CF SL
Sbjct: 374 KKSGYMQPLFDLTMPLGCFDSL 395


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 296 DKTAVDKEVNVSNSNAQAV--FVDTRSVGVNNFN 391
           DK    K+  V NSN +++  F    ++G+N+FN
Sbjct: 72  DKKTEFKQDEVPNSNGKSIPTFHPCNNIGINDFN 105


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 202 CSTEAEITA-NNCRGFLVEMGTAKLVKHGSGMFR 104
           CS E  +   NN R  L   G   L++HG G ++
Sbjct: 162 CSQEKAVEQLNNYRSLLRSDGRILLIEHGKGKYK 195


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 330 PIAMPKPFLLTPDPSV*IT 386
           P AMP P + +P PS+ +T
Sbjct: 555 PTAMPHPNITSPSPSISVT 573


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 303 RPLTKKSMCPIAMPKPF-LLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRPVILATL 479
           RP T + + P  +PK    L    SV   ST  +  +P+ S   +  + +G R     + 
Sbjct: 446 RPSTPRKVPPSTVPKMNPKLQGGNSVTAPSTP-SKVLPAMSPKVAP-KFQGGRSSTAPST 503

Query: 480 PSKFLPVTPAT*APRLK 530
           P+K LP   A  AP+L+
Sbjct: 504 PNKVLPAASAKAAPKLQ 520


>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
           II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 388 EVIHTDGSGVNKNGLGIAIGHIDFFVNGRLVQP 290
           EV+    + VNK G    IG ++ FV+  LV P
Sbjct: 86  EVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPP 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,407
Number of Sequences: 5004
Number of extensions: 49885
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)