Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a10r
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      89   3e-18
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   1e-15
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            66   2e-11
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)                  52   5e-07
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  47   1e-05
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_27171| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)           29   3.8  
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)                29   3.8  
SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)                     28   5.0  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   28   6.6  

>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 54/141 (38%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
 Frame = -2

Query: 544 VHIVGFNLGAHVAGVTGRNLEGK---VARITGLDPSARDW---ENNVLRLGTNDAQYVEV 383
           VH++GF+ GAHVAG  GR ++ +   + RIT LDP+A  W    +  +RL T+DA +V+V
Sbjct: 191 VHVIGFSFGAHVAGYVGRRMKKRGRMIDRITALDPAAM-WFHKHHEDVRLDTSDALFVDV 249

Query: 382 IHTDGSGVNKNGLGIAIGHIDFFVNGRLVQPGCTN--------NLCSHNRAYEVFAATI- 230
           IHT        G+   IGH DF+ NG   QPGC N          C H RA  +F  ++ 
Sbjct: 250 IHTSAD----YGITSTIGHADFYPNGGKKQPGCDNFFRGFSSYLFCGHKRAPALFTTSLY 305

Query: 229 THGKHYGNQCSTEAEITANNC 167
           T    Y   C +E +  + NC
Sbjct: 306 TKTPLYSYPCRSEDDFNSGNC 326


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 13/118 (11%)
 Frame = -2

Query: 541  HIVGFNLGAHVAGVTGRNLE---GKVARITGLDPSARDWEN-NV-LRLGTNDAQYVEVIH 377
            ++VGF+LGAH++G  GR +     K+ RITGLDP++  + N +V +RL  +DA +V+V+H
Sbjct: 690  YLVGFSLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVNAHVDVRLDPSDADFVDVMH 749

Query: 376  TDGSGVNKNGLGIAIGHIDFFVNGRLVQPGCTNNL--------CSHNRAYEVFAATIT 227
            TD   ++  G     GHIDF+ NG   QPGC + L        C H RA E +A ++T
Sbjct: 750  TD---MDLAGTPTVSGHIDFYPNGGKKQPGCRDLLDGPINYVICDHMRAPEYYAESVT 804


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 10/115 (8%)
 Frame = -2

Query: 595 GSSIATFLKN-LKLPLNK----VHIVGFNLGAHVAGVTGRNLE--GK-VARITGLDPSAR 440
           G+ +A F+K  L L  ++     H +GF+LGAH++G  G+ L+  G+ + RITGLDP+  
Sbjct: 151 GAQVAAFMKTILSLSGSREGGAFHSIGFSLGAHISGYVGQRLKRIGRHLDRITGLDPATL 210

Query: 439 DWENNV--LRLGTNDAQYVEVIHTDGSGVNKNGLGIAIGHIDFFVNGRLVQPGCT 281
            ++     +RL   DAQ+V+VIHT        G+    GH+DF+ NG   Q GC+
Sbjct: 211 MFKGEAPDVRLDRLDAQFVDVIHTS----YVFGITAPHGHMDFYPNGGTSQRGCS 261


>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
          Length = 408

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 10/87 (11%)
 Frame = -2

Query: 457 LDPSARDWENNVL--RLGTNDAQYVEVIHTDGSGVNKNGLGIAIGHIDFFVNGRLVQPGC 284
           LDP+   + N  +  RL  +DA++V+V+HTD   ++  G     GHIDF+ NG   QPGC
Sbjct: 2   LDPAGLYFVNEHVDVRLDPSDAEFVDVMHTD---MDFAGTSTQSGHIDFYPNGGKNQPGC 58

Query: 283 -------TNNL-CSHNRAYEVFAATIT 227
                  +N L C H RA++ F  +IT
Sbjct: 59  RDIADGPSNALKCDHVRAHDYFTESIT 85


>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/42 (50%), Positives = 26/42 (61%)
 Frame = -2

Query: 586 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARIT 461
           I T  +     L +VH++G +LGAHVAG  G  L GKV RIT
Sbjct: 89  ITTIQRVFDFDLRRVHLIGHSLGAHVAGYAGERLSGKVGRIT 130


>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 459

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
 Frame = -2

Query: 421 LRLGTNDAQYVEVIHTDGSGVNKNGLGIAI-GHID-FFVNGRLVQPGCTNNLCSHNRAYE 248
           + + +++  ++   +   SG   +     +  HID   +NG +V PG    +      Y 
Sbjct: 1   MSMSSDEVNFLVYRYLQESGFQHSAFTFGVESHIDQSSINGSVVPPGALVTILQKGVQYV 60

Query: 247 VFAATITHGKHYGNQCSTEAEITANN-CRG 161
              AT+T G  Y      EAE T    CRG
Sbjct: 61  EAEATVTEGVQY-----VEAEATVTEVCRG 85


>SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
 Frame = -2

Query: 538 IVGFNLGAHVAGVTG---RNLEG-KVARITG 458
           ++GF+LG HVAG  G   +N  G K+ RI+G
Sbjct: 21  VIGFSLGGHVAGYAGSRIKNTTGLKLGRISG 51


>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -2

Query: 586 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 446
           + +FL  + +   K H+ G ++G H+ GV       +VA +  + P+
Sbjct: 120 LLSFLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 166


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 322  DFFVNGRLVQPGCTNNLCSHNRAYEVFAATITHGKHYGNQCSTEA 188
            D++   ++   G T+  C     YE      T GK YGN+C   A
Sbjct: 1278 DYYAQCQVEDDGSTSCKCPIFCTYEYMPVCGTDGKTYGNKCEMRA 1322


>SB_27171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 355 KNGLGIAIG---HIDFFVNGRLVQPGCTNNLCSHNRA 254
           K+  G+ IG   H+D  VNG  VQ       C+HN+A
Sbjct: 12  KSSEGMYIGADLHLDKDVNGAYVQGSFIGGFCTHNKA 48


>SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)
          Length = 183

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 577 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 446
           FL  + +   K H+ G ++G H+ GV       +VA +  + P+
Sbjct: 1   FLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 44


>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
          Length = 450

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +3

Query: 288 PGWTRRPLTKKSMC-PIAMPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRP 461
           P    +P+    +C P+  P P +++P P   I  +   + VP+  TL  QS A    P
Sbjct: 193 PSPASQPVAPSPVCIPVQSPAPNMMSPSPQQFIAQSPAPTSVPTPGTLNVQSPASILNP 251


>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
          Length = 778

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 12  VETNFIGHHRKLRFKFCRHHKWN 80
           VE NF+GH R+ R   CR  K N
Sbjct: 233 VERNFVGHRRRCRRVVCRATKSN 255


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 37  TENFVLSFVGITNGMGTSCRYLLGTFQTHALQ-VWQYPFQ--LEILGNYLRLS 186
           +E     FV +TN M T+C+  +     H  + VW+Y     +E LGN +RL+
Sbjct: 394 SERMTALFVKVTNQMITACKNYI---TEHGYKNVWEYTHSELIEKLGNCIRLN 443


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,301,613
Number of Sequences: 59808
Number of extensions: 393385
Number of successful extensions: 1108
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)