Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a10f
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z74028-6|CAI91174.1|  674|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z74028-5|CAA98427.1|  677|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical
           protein M142.6 protein.
          Length = 1014

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 490 PSKYRHEVPIPFVMPTKLKTKFSVMTNKISFYINYY 597
           P +  H + I  +   K K+ F  +  KISF++N+Y
Sbjct: 636 PGQPPHTIWIQSIGVFKRKSNFLKIVRKISFFLNFY 671


>Z74028-6|CAI91174.1|  674|Caenorhabditis elegans Hypothetical
           protein C14C10.3b protein.
          Length = 674

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
 Frame = +2

Query: 158 DWENNVLRLGTN---DAQYVEVIHTDGSGVNKNGLGIAI----GHIDFFVNGRLVQPGCT 316
           DW+    + GT    D  ++  + +D  G++K    + +    G   F    R++   CT
Sbjct: 458 DWKLLSNKYGTQQGIDDYWMAALKSDAKGLDKRIEALLLHSGKGEHPFATMARMI---CT 514

Query: 317 N-NLCSHNRAYEVFAATITHGKHYGNQCSTEAEITANNC---RGFLVEMGTAKLVKHGSG 484
              L   + A EVF      GKH+  Q ++  E     C      LVE G     + G G
Sbjct: 515 LLKLARIDEALEVFQKVSVSGKHFKQQLASFVEQNDLECIERLAMLVERGMIAEKRRGGG 574


>Z74028-5|CAA98427.1|  677|Caenorhabditis elegans Hypothetical
           protein C14C10.3a protein.
          Length = 677

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
 Frame = +2

Query: 158 DWENNVLRLGTN---DAQYVEVIHTDGSGVNKNGLGIAI----GHIDFFVNGRLVQPGCT 316
           DW+    + GT    D  ++  + +D  G++K    + +    G   F    R++   CT
Sbjct: 458 DWKLLSNKYGTQQGIDDYWMAALKSDAKGLDKRIEALLLHSGKGEHPFATMARMI---CT 514

Query: 317 N-NLCSHNRAYEVFAATITHGKHYGNQCSTEAEITANNC---RGFLVEMGTAKLVKHGSG 484
              L   + A EVF      GKH+  Q ++  E     C      LVE G     + G G
Sbjct: 515 LLKLARIDEALEVFQKVSVSGKHFKQQLASFVEQNDLECIERLAMLVERGMIAEKRRGGG 574


>Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical
           protein M142.6 protein.
          Length = 1014

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 490 PSKYRHEVPIPFVMPTKLKTKFSVMTNKISFYINYY 597
           P +  H + I  +   K K+ F  +  KISF++N+Y
Sbjct: 636 PGQPPHTIWIQSIGVFKRKSNFLKIVRKISFFLNFY 671


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,770,749
Number of Sequences: 27780
Number of extensions: 294887
Number of successful extensions: 712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)