Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a10f
(626 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f... 31 0.47
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 31 0.83
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f... 30 1.1
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f... 30 1.1
At2g13560.1 68415.m01495 malate oxidoreductase, putative similar... 29 1.9
At4g17740.2 68417.m02649 C-terminal processing protease, putativ... 28 4.4
At3g49200.1 68416.m05377 hypothetical protein 28 4.4
At1g49590.1 68414.m05560 formin-binding protein-related similar ... 28 5.8
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 28 5.8
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 28 5.8
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 28 5.8
At4g00350.1 68417.m00046 MATE efflux family protein similar to r... 27 7.7
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 27 7.7
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 27 7.7
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /... 27 7.7
>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 475
Score = 31.5 bits (68), Expect = 0.47
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 5 SSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITG 139
S IA +LKN KL +N + + L +A + + GK+ + G
Sbjct: 420 SDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGKEVG 464
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 30.7 bits (66), Expect = 0.83
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = +2
Query: 167 NNVLRLGTNDAQYVEVIHTDGSGVNKNGLGIAIGHIDFFVNGRLVQPGCTNNLCSHN--- 337
N + L N Q +EV+ + G L + H RL++ T+ LC N
Sbjct: 417 NTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLIS 476
Query: 338 -RAYEVFAATITHGKHYGNQCSTE 406
R V + G H +Q S+E
Sbjct: 477 ARLDAVSEISACMGSHSSSQLSSE 500
>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 488
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 5 SSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 130
S IA +LKN KL +N + + L +A + + GK+ +
Sbjct: 420 SDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGK 461
>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 550
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 5 SSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 130
S IA +LKN KL +N + + L +A + + GK+ +
Sbjct: 420 SDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGK 461
>At2g13560.1 68415.m01495 malate oxidoreductase, putative similar to
NAD-dependent malic enzyme 62 kDa isoform, mitochondrial
precursor (EC 1.1.1.39) (NAD-ME) (SP:P37221) {Solanum
tuberosum}
Length = 623
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = +2
Query: 92 GVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDAQYVE-VIHTDGSGV------NKNG 250
G+ +N G R G+ SA D + + A+ V+ ++ TDGS + +G
Sbjct: 148 GLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVHG 207
Query: 251 LGIAIGHIDFFVNGRLVQP 307
+GIA+G +D +V + P
Sbjct: 208 IGIAVGKLDLYVAAAGINP 226
>At4g17740.2 68417.m02649 C-terminal processing protease, putative
similar to C-terminal protease precursor [Spinacia
oleracea] GI:999435; similar to SP|Q44879| (Bartonella
bacilliformis)
Length = 505
Score = 28.3 bits (60), Expect = 4.4
Identities = 25/94 (26%), Positives = 43/94 (45%)
Frame = -3
Query: 288 LTKKSMCPIAMPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRPVILATLPSK 109
L S+ PI+ KP + P+ S+ I+ S+ SRS + SR+ + P ++ ++
Sbjct: 4 LASSSLSPISFTKPNKINPNFSIQISKASKFSYARSRSNI---SRSNAANPGVVFVC-NR 59
Query: 108 FLPVTPAT*APRLKPTMCTLLSGNLRFFKKVAIL 7
FL V +L + S N R VA++
Sbjct: 60 FLCVIERNDQRKLSGKVMMKSSVNFRQNLSVALV 93
>At3g49200.1 68416.m05377 hypothetical protein
Length = 507
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +2
Query: 110 LEGKVARITG--LDPSARDWENNVLRLGTNDAQYVEVI---HTDGSGVNKNGLGIA 262
LE V+ +T LD S WE ++L L T+DA+ V V+ H+ G G++ L +A
Sbjct: 120 LESYVSDLTTIPLDTSKPLWEVHLLDLKTSDAENVAVLRIHHSLGDGMSMMSLVLA 175
>At1g49590.1 68414.m05560 formin-binding protein-related similar to
formin binding protein 21 (GI:3550080) [Homo sapiens];
similar to formin binding protein 21 (GI:3550077) [Mus
musculus]; similar to Dinap1-interacting protein 1
(GI:8745458) [Crypthecodinium cohnii]
Length = 242
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 436 ISS*NGYCQTCKAWVWNVPSKYRH 507
+S N +C+ CK W+ N P+ R+
Sbjct: 6 VSQGNKWCEFCKIWIQNNPTSIRN 29
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +2
Query: 302 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 412
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +2
Query: 302 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 412
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +2
Query: 302 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 412
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At4g00350.1 68417.m00046 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554
Uncharacterized membrane protein family
Length = 542
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 575 ILLVITENFVLSFV-GITNGMGTSCRYLLGTFQTHALQVWQYPFQLEILGNYLRLSPL 405
I L + NF F+ G+ + + T C G Q L V+ L +LG + L PL
Sbjct: 130 IALSVVSNFSFGFLLGMASALETLCGQAFGAGQMDMLGVYMQRSWLILLGTSVCLLPL 187
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -3
Query: 243 LLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRPVILATLPSKFLPVTPAT 85
L + P+ T+++ VP ST S S+ + + P +LPS PAT
Sbjct: 451 LASSTPATGSTNSFTGFAVPKTSTPASSSQPQTTSPAFSFSLPSSTSTTAPAT 503
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 350 VFAATITHGKHYGNQCSTEAEI 415
+F TI YG++C+TEAEI
Sbjct: 1111 LFGTTIYENIAYGHECATEAEI 1132
>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
gibberellin-responsive modulator identical to GB:Y11336,
member of SCARECROW family
Length = 587
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 128 RITGLDPSARDWENNVLRLGTNDAQYVEVIHTD 226
R+TG+ P A D +++ +G AQ E IH +
Sbjct: 354 RLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVE 386
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,805,101
Number of Sequences: 28952
Number of extensions: 269280
Number of successful extensions: 699
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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