Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a09r
(380 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23) 109 1e-24
SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.32
SB_38972| Best HMM Match : PIP5K (HMM E-Value=0) 28 2.2
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_4336| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2) 27 5.2
SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4) 27 5.2
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_15331| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
Length = 131
Score = 109 bits (261), Expect = 1e-24
Identities = 60/108 (55%), Positives = 70/108 (64%)
Frame = -2
Query: 334 KVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 155
KVK ELR K L+ LRVAKVTGG ASKLSKI+VVRK++ARV V
Sbjct: 11 KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVS 70
Query: 154 QKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 11
Q + NLR Y+ KKY PLDLR K TRAMR++LTK EA KT K+ +K
Sbjct: 71 QTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQQKK 118
>SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 31.1 bits (67), Expect = 0.32
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = -2
Query: 220 ASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTK 50
ASK SK RV R IA++ H ++ +RN N K +R K+RAM+K T+
Sbjct: 588 ASKKSKKRVGRPDIAQLMRAKHFGIQTEVRN--LNSKCLIFGVRKFKSRAMKKMQTR 642
>SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 426
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 187 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTR 74
KA ++V + H K NL +H+K K+Y P+ R + R
Sbjct: 70 KAYSKVRVDNHLFNKENLPSHFKFKEYCPMVFRNLRER 107
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 133 RNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIR 14
+ +K K+ K D + +K+RA + LTK + +IK E+R
Sbjct: 289 KKKHKKKEKKEKDEK-RKSRAEDEGLTKEQLEIKEANELR 327
>SB_4336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 175 RVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKI--KTRKEIRKKS 5
R +V + VN+R+ NKK+K ++ R++ M+ + +K+ K K + K+S
Sbjct: 23 RPKVVNMRSKVVNMRSKVVNKKFKAVNKRSRAVN-MKSTVVSMRSKVVDKRSKSVDKRS 80
>SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)
Length = 245
Score = 27.1 bits (57), Expect = 5.2
Identities = 23/103 (22%), Positives = 38/103 (36%)
Frame = -2
Query: 355 NVTVKMGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIA 176
N+TV + K K L N+ K G V S + V ++ I
Sbjct: 45 NLTVYLDKTKIMVFNNCAKSMNNYRFNYQGNLLKNVTSYKYLGIVFSAIGNFNVAKEEIK 104
Query: 175 RVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKH 47
++ + KMK + +HY++ L AK T + K+
Sbjct: 105 KIALKALYKMKKEMGSHYRDNLKLATRLFAKLTNKSKCRSVKY 147
>SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4)
Length = 160
Score = 27.1 bits (57), Expect = 5.2
Identities = 22/83 (26%), Positives = 41/83 (49%)
Frame = -2
Query: 256 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKT 77
TN V ++ G + + R ++K R+ +++K R K K K R++K
Sbjct: 24 TNAVVFVLSQGKIRSIERQRQIKKLTKRI-----KRIKALNRGKRKKKHSK----RSQKL 74
Query: 76 RAMRKALTKHEAKIKTRKEIRKK 8
R MR+ L + + K K+ ++ R+K
Sbjct: 75 REMRRWLRRFKQKGKSDRDARRK 97
>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1263
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 101 FRFKSQEDPCYAQGSY*TRSKDQDEERD 18
F S DP Y G Y D+DEE D
Sbjct: 1207 FNVTSGSDPDYGNGDYDYDENDEDEEGD 1234
>SB_15331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 145 KVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKT 29
K+N ++H K KK K T +++ L K + K KT
Sbjct: 138 KINEKSHVKAKKKKDKSSVPGNTEKLKRHLKKSKEKTKT 176
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,282,587
Number of Sequences: 59808
Number of extensions: 143713
Number of successful extensions: 413
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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