Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a09r
(380 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari... 110 3e-25
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari... 110 3e-25
At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo... 109 5e-25
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) 109 5e-25
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi... 109 6e-25
At5g25330.1 68418.m03005 hypothetical protein contains Pfam prof... 29 1.0
At4g14350.2 68417.m02211 protein kinase family protein contains ... 27 3.2
At4g14350.1 68417.m02210 protein kinase family protein contains ... 27 3.2
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 27 3.2
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 27 5.6
At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains simi... 27 5.6
>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 110 bits (265), Expect = 3e-25
Identities = 59/110 (53%), Positives = 72/110 (65%)
Frame = -2
Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
M ++K ELR K L +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 11
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 110 bits (265), Expect = 3e-25
Identities = 59/110 (53%), Positives = 72/110 (65%)
Frame = -2
Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
M ++K ELR K L +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 11
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
ribosomal protein L35- cytosolic, Arabidopsis thaliana,
PIR:T00549
Length = 123
Score = 109 bits (263), Expect = 5e-25
Identities = 59/111 (53%), Positives = 72/111 (64%)
Frame = -2
Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
M ++K ELR K L LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 8
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K+
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKE 111
>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
Length = 123
Score = 109 bits (263), Expect = 5e-25
Identities = 59/111 (53%), Positives = 72/111 (64%)
Frame = -2
Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
M ++K ELR K L LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 8
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K+
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKE 111
>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
to 60S ribosomal protein L35 GB:AAC27830
Length = 123
Score = 109 bits (262), Expect = 6e-25
Identities = 59/111 (53%), Positives = 72/111 (64%)
Frame = -2
Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
M ++K ELR K L LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 8
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K+
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKE 111
>At5g25330.1 68418.m03005 hypothetical protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 366
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -2
Query: 163 VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 20
V H VN +H + YKPL++RA+ + +R A ++ +TRK+
Sbjct: 290 VTHVDWSVN--DHGHPRTYKPLEVRAELIQKLRSARPRYGDGNRTRKD 335
>At4g14350.2 68417.m02211 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -2
Query: 256 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKK 110
+N++ T G LS I + A A++YI H KM++ K ++
Sbjct: 27 SNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERR 75
>At4g14350.1 68417.m02210 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -2
Query: 256 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKK 110
+N++ T G LS I + A A++YI H KM++ K ++
Sbjct: 27 SNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERR 75
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 112 KYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 20
KY+P D AKK R ++KA + E K K+
Sbjct: 93 KYRPEDKAAKKERLVKKAQAEAEGKPSESKK 123
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 112 KYKPLDLRAKKTRAMRKALTKHEAK 38
KY+P D AKK R + KA + E K
Sbjct: 92 KYRPEDKAAKKERLLNKAQAEAEGK 116
>At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains
similarity to MADS-box protein GB:AAC26702 GI:3128222
from [Arabidopsis thaliana]; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 184
Score = 26.6 bits (56), Expect = 5.6
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = -2
Query: 217 SKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK 38
S SK+R + K + ++ K RN K+ + +DL+ + A + L ++A
Sbjct: 73 SASSKLRSLMKELEQIKEFQEDLRKKQQRNLEKSNMKENVDLKLEDLVAFKAKLEAYQAG 132
Query: 37 IKTRKEIRKKSL 2
+K RK + + L
Sbjct: 133 LK-RKHVEMEDL 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,451,467
Number of Sequences: 28952
Number of extensions: 97779
Number of successful extensions: 283
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -