Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a08r
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    29   0.44 
SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S...    29   0.58 
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    27   3.1  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   5.4  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   9.5  

>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 438 RSPEDVMTNRQYSRFLSLFETPKVKANLRAISYIFPNKN 554
           R+PE +++ R+YS+ + L+ T  + A + +   +FP K+
Sbjct: 208 RAPEIMLSFREYSKAIDLWSTGCILAEMLSARPLFPGKD 246


>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
           Dim1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 20/83 (24%), Positives = 38/83 (45%)
 Frame = +1

Query: 328 LRDQEKSIIVKFTKRFAN*LTYYTYILFMYVVTVVSLEVLRM**RTDNIPDFYPYSKLLK 507
           L +QE+ ++++F +           +L+     VV++ V+ +    D +PDF    +L  
Sbjct: 19  LSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYLV-DIDEVPDFNKMYELYD 77

Query: 508 SKLIYERYRTFFRIKILGTSSNS 576
              I   YR    +  LGT +N+
Sbjct: 78  RTTIMFFYRNKHMMIDLGTGNNN 100


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 399 IHSFHVCRYSGFARSPEDVMTN 464
           I+S ++C YSGF R+  DV  N
Sbjct: 274 INSLYLCDYSGFFRTLADVEVN 295


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 532 RTFFRIKILGTSSNSFYVLCRH*ILLNSFVKTI 630
           RT FR+ +L T S   YV+ R  +  N +VK +
Sbjct: 380 RTVFRLNVLMTKSMDSYVVYRKNMGRNFYVKCV 412


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 65  LYLPTFCNVFTEFIYVFNET 6
           LY   FCN F EF+    ET
Sbjct: 92  LYCLPFCNAFIEFVKKLTET 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,673
Number of Sequences: 5004
Number of extensions: 59693
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)