Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a08r
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0256 - 42328795-42329172,42330245-42330379,42330783-423310...    29   4.2  
03_05_1072 + 30148360-30148833,30148959-30149036,30149156-301492...    28   7.4  

>01_07_0256 -
           42328795-42329172,42330245-42330379,42330783-42331033,
           42331290-42331341,42331619-42331647,42331812-42332105,
           42332229-42332378,42333915-42334405,42334513-42334613,
           42334941-42335037,42335882-42335950,42336036-42336122,
           42336423-42336494,42336795-42336863,42337784-42337858,
           42338230-42338301,42338378-42338449,42338533-42338676,
           42339106-42339177,42339294-42339365,42339804-42339954,
           42340204-42340297
          Length = 1008

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = -2

Query: 88  LIENIDFFCIFPPFVMYSLSLFMFLTK 8
           LI N+DFFCI    VMYS +L +FL K
Sbjct: 378 LIGNLDFFCI-DGIVMYSATL-LFLNK 402


>03_05_1072 +
           30148360-30148833,30148959-30149036,30149156-30149255,
           30149371-30149501,30149604-30149855
          Length = 344

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 154 IYRSF--PFAIIILTIDKASFFYALIENIDFFCIFPPFVMYSLSLFM 20
           + RSF   F  +  TID+A     LIE ID F I    + + + +++
Sbjct: 189 VVRSFFVQFRALTQTIDQAEIIKLLIEAIDMFLIGTALLTFGMGMYI 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,855,258
Number of Sequences: 37544
Number of extensions: 281925
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)